Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2059 118 1e-21 >seq2059 Length=13280 Score = 118 bits (130), Expect = 1e-21 Identities = 386/597 (65%), Gaps = 12/597 (2%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || ||||||| || || | || ||||||||| ||| ||| || |||||||| Sbjct 6291 CCCGGGCATTCATTGGGGCAGAGCAGCGACCACTCGGCGTTGGCCTCGACACGTTTCATG 6350 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||| || || | ||| || || || || || | | | || || || || Sbjct 6351 AAGAGGTCGGGCACCCAGAGCGCGTAGAAGAGGTCACGCGCGCGCGCCTCTTCCTTGCCG 6410 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||||| ||||||||||| || | || || |||||||| || | ||| | | Sbjct 6411 TGGTTCTTTTTGAGATCGAGGAAGGCGAAGATGTCTCCGTGCCACGGCTCGAGGTACACG 6470 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | || |||| ||| || ||||| | | | | || ||||| || | Sbjct 6471 GCGAACGAGCCCTGCCGCTTGCCACCGCCCTGCGAAACGAAGCGCGCCGTGTTGTTGAAG 6530 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | || ||| || || | |||||||| | || ||||| ||| || |||||||| Sbjct 6531 ACGCGCAGCATCGGGATGAGCCCATTGGAGGTGCCGTTGGTACCGCGAATGTAGCTTCCC 6590 Query 54281 CTGGCACGAATATTACTAAT--TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 ||||||||||| || |||| || | || || ||| || ||||| | | Sbjct 6591 GACGCACGAATATTGCTCGCGCTGATT--CCAACGCCACCCGCCGCCTTCGAGATGAGCG 6648 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 |||| || || | ||| | ||||||||||| || || |||| |||| || || | Sbjct 6649 CGCACCGCTTCAGCGTGGCGTAGATGCCCTCGATGGAGTCGTCCACCATGGAGAGGAGGA 6708 Query 54399 AACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 | || ||||| || || || | | ||||| || || | ||| || || ||| Sbjct 6709 AGCACGACGACATCTG----CGGCTTGGGCGTGCCCGCGTTGAACATGGTCGGCGAGGCG 6764 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 ||||| ||||| | || || | || | |||||||| || || | || || || | Sbjct 6765 TGCGTGAACCACCTCTCTGACATGAGCGTATACGTCTCAATCGCCGCCTCGATGTCGCTG 6824 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 54571 | || || || | || || ||||| |||||||||||||| | || || | |||| Sbjct 6825 AGGTGGATGCCAAGCGCCACGCGCATCAACATGTGCTGAGGCCGCTCGACAACCTTG 6881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593696277773760