Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1787 109 5e-19 seq2338 98.7 8e-16 seq2411 96.9 3e-15 seq1754 89.7 4e-13 seq262 86.0 5e-12 >seq1787 Length=9008 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||| | || | || |||||||| || ||||| || |||| ||||| || |||| Sbjct 974 GAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTC 915 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||| ||||| ||||| ||| | || || | ||||||||| ||| | ||| |||||||| Sbjct 914 CTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 855 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | ||||| | || ||||| || | ||| || || Sbjct 854 CTGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGT 795 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| | ||| |||||||| || ||||| Sbjct 794 CTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 762 >seq2338 Length=9794 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | || | || |||||||| || || || || |||| Sbjct 8113 CCACCACGAAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAG 8172 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||| ||| | || || | ||||||||| ||| Sbjct 8173 AGGGTGCGGCCGTCCTCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 8232 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | ||||| | || | | ||| Sbjct 8233 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGACC 8292 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| | ||| |||||||| || ||||| Sbjct 8293 TCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 8339 >seq2411 Length=24813 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||||| ||||| || ||||||||||||| |||||| Sbjct 4397 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCC 4338 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||| | || || | |||||| ||| ||| | ||| |||||||| |||||| Sbjct 4337 GCAAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 4285 >seq1754 Length=9193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||| |||| || ||||| || |||| ||||| || ||||| | ||||| |||||| Sbjct 6189 GTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCC 6130 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||||||||| || | ||| |||||||| ||| || || Sbjct 6129 GCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTG 6070 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| | ||| ||||| || | ||| || ||||||||||| | ||| Sbjct 6069 ACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTC 6010 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 6009 TTGACAAAGATCTGCAT 5993 >seq262 Length=5824 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | || | || ||| |||| || || | ||||||| Sbjct 3031 CCACCGCGTAGGCGGAGCACGAGGTGGAGGGTCGACCCCTTCTGGATATGGTAGTCCGAG 3090 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||||| | || | | ||||||||| || Sbjct 3091 AGGGTGCGGCCGTCCTCGAGCTGCCTGCCCGCGAAGATTAAGCGCTGCTGGTCGGGCGGG 3150 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||| | || || | ||||| | ||| ||||| Sbjct 3151 ATGCCCTCCTTGTCCTGGATCCTGGCCTTGACGTTGCCGATCGAGTCAGACGGCTCGACC 3210 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| | || |||||||| || ||||| Sbjct 3211 TCGAGGGTGATCGTCTTGCCGGTGAGCGCCTTGACAAAGATCTGCAT 3257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422241640878992