Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2836 127 2e-24 seq2059 125 6e-24 seq1787 120 3e-22 seq1754 118 9e-22 seq2994 111 1e-19 seq2338 111 1e-19 seq1041 111 1e-19 seq2411 87.8 2e-12 seq3275 82.4 7e-11 >seq2836 Length=15749 Score = 127 bits (140), Expect = 2e-24 Identities = 323/489 (66%), Gaps = 2/489 (0%) Strand=Plus/Plus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 ||||||||| ||||| | || | ||||||| ||||||| || ||||||||||| Sbjct 7717 GTCGACGGTGAACTTGATCGCATCCGCGGCGGCGCGCGTGCGCAGGTAGTACATGCCCGT 7776 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTC 132997 || || |||| ||| |||| ||||| || ||| | | | || |||| || Sbjct 7777 CTTGAGGCCCTTCTTCCAGCCGTAGAAGTGCATCGACGAGAGCTTGGCATAGTTGGGCTC 7836 Query 132998 GGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCAT 133057 || | || | || | ||| || || || || ||||| | | |||||||||||||| Sbjct 7837 GGTCATGAACACGTTGAACGACTGGCTTTGGTCGATGAACGCGCCGCGGTCGGCGGCCAT 7896 Query 133058 GTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTG 133117 || || | | |||| |||||| ||| | |||| |||| | | Sbjct 7897 GTCGATGAGTGAGCGCATCTTGAGCTCCCAGCACGTACGGTAGAGCAGTTTGAGGTCGTC 7956 Query 133118 TGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTC 133177 || || ||| || |||||| || ||||| | || | |||| |||||| | Sbjct 7957 GGGGATCTCGGGGATCCGCTGCACCGAGCCGTTGTGCGCGATGATCTGGTTGCGGATCGA 8016 Query 133178 CGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAA 133237 | || | | | || | || || || | | || | |||||||||||| || Sbjct 8017 CTCTGTCCAGAGGCCGCGCTCCATCAGGTCGCGCAACAGGTGCTGGTTGACCACCGCGAA 8076 Query 133238 CTCGCCGGCGAGAACGCGTCTGAGA-TATACATTCGACGTGAACGGTTCGAAAGATTCGT 133296 |||||| ||||| ||||| | |||| || | || |||||| |||| ||||| | |||| Sbjct 8077 CTCGCCAGCGAGTACGCGGC-GAGAGTACAGGTTGGACGTGTACGGCTCGAAGCACTCGT 8135 Query 133297 TGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTC 133356 ||||||| || ||||||||||||| ||| ||||||||| ||| | || || ||||| | Sbjct 8136 TGTTGCCCAGGATCTGCGCCGTCGACGCGGTGGGCATGGGCGCGAGCAGCAGCGAGTTGC 8195 Query 133357 TTACGCCGT 133365 || |||| Sbjct 8196 GTAGCCCGT 8204 >seq2059 Length=13280 Score = 125 bits (138), Expect = 6e-24 Identities = 327/491 (67%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 ||||||||| || || |||| | || || | || | |||| || ||||||||||| Sbjct 5102 GTCGACGGTGAATTTGATGGCGTCGGCCGCTGCCTTGGAACGCAGGTAGTACATGCCCGT 5161 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGT-GGGTT 132996 || || |||| ||| |||| || || || ||| | | ||| | |||| Sbjct 5162 CTTGAGGCCCTTCTTCCATCCGTAGAAATGCATCGACGAGAGCTTGCCGTAGTTCGGGTC 5221 Query 132997 CGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCA 133056 | || || |||| || | || ||||| || ||||| | | ||||||||||||| Sbjct 5222 CTGC-ACGAATACGTTGAAGCTCTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCGGCCA 5280 Query 133057 TGTTTATTATACA-CTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGC 133115 | | || | | | || || ||| ||||| | || | |||| ||||||||| Sbjct 5281 TATCGATGAGCGAGCGCTGCTT-GATTTCCCACGATGTGCGGTAGAGCATCTTGACATCG 5339 Query 133116 TGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAAT 133175 || || ||| || | |||||| || ||||| | || | |||| |||||| | Sbjct 5340 GCCGGGATCTCGGGGATCTGCTGCACCGAACCGTTGTGCGCGATGATCTGGTTGCGAATC 5399 Query 133176 TCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGA 133235 ||||| || | | ||| |||| || || | |||| || | |||||| || || Sbjct 5400 TCCGGCGTCCACAAGTCCCGATCCATCAGATCCTTGAGCAGGTGCTGGTTAACGACCGTG 5459 Query 133236 AACTCGCCGGCGAGAACGCGTCT-GAGATATACATTCGACGTGAACGGTTCGAAAGATTC 133294 |||||||||| | ||||| | ||| || | || |||||| | || ||||| | || Sbjct 5460 AACTCGCCGGACAACACGCGGCGCGAG-TAAAGGTTGGACGTGTATGGCTCGAAGCACTC 5518 Query 133295 GTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTT 133354 ||||||||| || |||||||| |||| ||| ||||||||| ||| || | || ||||| Sbjct 5519 GTTGTTGCCCAGGATCTGCGCTGTCGACGCGGTGGGCATGGGCGCGACGAGCAGCGAGTT 5578 Query 133355 TCTTACGCCGT 133365 | || |||| Sbjct 5579 GCGTAGCCCGT 5589 >seq1787 Length=9008 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || ||||||||||| | ||||| ||||| Sbjct 971 CACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTC 912 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || |||| || |||||||| ||||| || |||||||||||||| Sbjct 911 GAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 852 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | ||| | ||||| ||||||||||| ||| | ||| || Sbjct 851 GATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTCTT 792 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || || || ||||| ||||||||| Sbjct 791 GCCGGTGAGCGTCTTGACAAAGATCTGCATG 761 >seq1754 Length=9193 Score = 118 bits (130), Expect = 9e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||| | || || ||||||||||| | ||||| ||| ||||||| Sbjct 6196 GTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTG 6137 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| || |||||||| ||||| || |||||||||||||| ||||| Sbjct 6136 CTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTT 6077 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| | ||| | ||||||||||| ||| | ||| |||||||| Sbjct 6076 GGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGT 6017 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||||||| Sbjct 6016 GAGCGTCTTGACAAAGATCTGCATG 5992 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||| | || || ||||||||||| | ||||| ||| ||||||| Sbjct 6424 GTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTG 6365 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| || || ||||| ||||| || |||||||||||||| ||||| Sbjct 6364 CTTGCCCGCGAAGATCAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTT 6305 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| | | | | ||||||||||| ||| | ||| |||||| | Sbjct 6304 GGCCTTTACGTTGTCGATCGAGGCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGCT 6245 Query 118715 CAGAGTTTTTACAAAAATCTGCA 118737 || || || ||||| || |||| Sbjct 6244 GAGCGTCTTGACAAAGATTTGCA 6222 >seq2994 Length=21391 Score = 111 bits (122), Expect = 1e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | ||||| || || || |||||||||||| | ||||| |||||| Sbjct 16545 CACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGACCATCCTC 16604 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| | ||||| |||||||| ||||| || ||||||||||||||| Sbjct 16605 GAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 16664 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 || || || || | || | | |||||| | ||||||||||| ||| Sbjct 16665 GATCTTGGCCTTGACGTTGTCAATGCTGTCCGAGGGCTCGACCTCGAGGGT 16715 >seq2338 Length=9794 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || || |||||||| | ||||| ||||| Sbjct 8130 CACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTC 8189 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || |||| || |||||||| ||||| || |||||||||||||| Sbjct 8190 GAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 8249 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | ||| | ||||| |||||||||||| ||| | ||| || Sbjct 8250 GATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGACCTCGAGGGTGATCGTCTT 8309 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || || || ||||| ||||||||| Sbjct 8310 GCCGGTGAGCGTCTTGACAAAGATCTGCATG 8340 >seq1041 Length=17511 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || |||||||| || | |||||| ||||| Sbjct 5001 CACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCCTC 4942 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || |||||||| ||||| || |||||||||||||| Sbjct 4941 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 4882 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| | ||| | ||||||||||| ||| | ||| || Sbjct 4881 GATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTT 4822 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || || || || || ||||||||| Sbjct 4821 GCCAGTGAGCGTCTTGACGAAGATCTGCATG 4791 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | |||||| ||||| Sbjct 5229 CACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTC 5170 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| ||||||||||| ||||| || |||||||||||||| Sbjct 5169 GAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 5110 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | | ||| | ||||||||| | ||| | ||| || Sbjct 5109 GATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTCTT 5050 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || || || || || ||||||||| Sbjct 5049 GCCAGTGAGCGTCTTGACGAAGATCTGCATG 5019 >seq2411 Length=24813 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || || | ||||| || ||||| || || |||||||| || Sbjct 4428 ACCACCGCGGAGGCGCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 4369 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||||| ||||| || || || ||||||| ||||||||||| || || Sbjct 4368 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGG 4309 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || || || | |||| || ||||| ||| || Sbjct 4308 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGAGTCCGAAGGCTCCAC 4249 Query 118691 CTCGACGGTCACCGTTTTGCC 118711 ||| | ||| | ||| ||||| Sbjct 4248 CTCAAGGGTGATCGTCTTGCC 4228 >seq3275 Length=32583 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 |||||| ||| |||||||| ||||| ||| | || | || |||||| ||| Sbjct 7522 GGTTGAGCACAAAGAACTCGCCCGCGAGCGTGCGCCGCGCGTACAGGTTGGACGTGTACG 7463 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | ||||| | ||||||||||| || ||||||||||||| ||| ||||||||| ||| | Sbjct 7462 GCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGCCGTCGACGCGGTGGGCATGGGCGCGA 7403 Query 133342 CCAACAAAGAGTT 133354 || || ||||| Sbjct 7402 GCAGCAGCGAGTT 7390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433812359705104