Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1787 116 4e-21 seq1754 116 4e-21 seq1041 116 4e-21 seq2338 107 2e-18 seq1956 98.7 1e-15 seq262 98.7 1e-15 seq2994 89.7 6e-13 >seq1787 Length=9008 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | || || || |||| || |||||||| || || || Sbjct 953 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 894 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 893 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 835 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 ||| | || ||| || || || |||| ||||| || ||||| || |||||||| | Sbjct 834 TGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGA 775 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 774 CAAAGATCTGCAT 762 >seq1754 Length=9193 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || |||||||| | || || || |||| | |||||||| || ||||| | Sbjct 6182 CCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGA 6123 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||||| ||| | || |||||||||| |||||| |||| ||| | Sbjct 6122 TCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGA-CGTTG 6064 Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || ||| || || || |||| ||||| || ||||| || |||||||| ||| Sbjct 6063 TCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACA 6004 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 6003 AAGATCTGCAT 5993 Score = 102 bits (112), Expect = 9e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || |||||||| | || || || |||| | |||||||| || ||||| | Sbjct 6410 CCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGA 6351 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || || |||||||||| ||| | || |||||||||| |||||| || | ||| | Sbjct 6350 TCAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTTA-CGTTG 6292 Query 43114 CC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || | | || || || |||| ||||| || ||||| | |||||||| ||| Sbjct 6291 TCGATCGAGGCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGCTGAGCGTCTTGACA 6232 Query 43173 AAGATTTGCA 43182 |||||||||| Sbjct 6231 AAGATTTGCA 6222 >seq1041 Length=17511 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || ||| |||| || |||||||| || ||||| Sbjct 4983 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAA 4924 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| ||| | || |||||||||| ||| || |||| ||| Sbjct 4923 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 4865 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| || || || |||| ||||| || ||||| || |||||||| | Sbjct 4864 TGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCAGTGAGCGTCTTGA 4805 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 4804 CGAAGATCTGCAT 4792 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || ||| |||| || |||||||| || ||||| Sbjct 5211 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAA 5152 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| ||| | || |||||||||| ||| || |||| ||| Sbjct 5151 GATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 5093 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| || || || || | ||||| || ||||| || |||||||| | Sbjct 5092 TGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTGA 5033 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 5032 CGAAGATCTGCAT 5020 >seq2338 Length=9794 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||||||||| | || || || |||| || ||||| || || || Sbjct 8148 CTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGGAGGCCGGCAAA 8207 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 8208 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 8266 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 ||| | || ||| || || || |||| ||||| || ||||| || |||||||| | Sbjct 8267 TGCCGATCGAGTCCGCCGTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGA 8326 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 8327 CAAAGATCTGCAT 8339 >seq1956 Length=13199 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||||||||| || | || || || |||| || |||||||| || ||||| Sbjct 2553 TCCTTCTGAATATTGTAGTCTGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 2612 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || ||||||||||| ||| | || |||||||||| ||| | || | |||| ||| Sbjct 2613 ATCAGGATCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGT 2670 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| || ||||| || | ||||| || || || || |||||||| | Sbjct 2671 TGTCGATCGAGTCCGACGCGTCCACCTCAAGCGTGAGCGTCTTTCCGGTGAGCGTCTTGA 2730 Query 43171 CAAAGATTTGCA 43182 | | ||| |||| Sbjct 2731 CGATGATCTGCA 2742 >seq262 Length=5824 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || |||| ||| || | || || || |||| || |||||| | || ||||| | Sbjct 3068 CCTTCTGGATATGGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCCTGCCCGCGAAGA 3127 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | ||||||||||||| ||| | || |||||||||| ||| | |||| ||| | Sbjct 3128 TTAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCCTGGCCTTGA-CGTTG 3186 Query 43114 CC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | || ||| || || || |||| ||||| || ||||| || |||| ||| ||| Sbjct 3187 CCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGCCTTGACA 3246 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 3247 AAGATCTGCAT 3257 >seq2994 Length=21391 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||||| || ||||| || || |||||||| | || || || | || || Sbjct 16545 CACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGACCATCCTC 16604 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 |||||||| |||||||| ||||| ||||||||||||| ||| | || ||||||||| Sbjct 16605 GAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 16661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571793211979360