Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1787 122 6e-23 seq1041 122 6e-23 seq1754 113 3e-20 seq2338 104 2e-17 seq2994 98.7 6e-16 seq262 98.7 6e-16 seq2411 86.0 4e-12 >seq1787 Length=9008 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| |||||||| || || || ||| |||| Sbjct 973 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 914 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || || |||||||||||| ||| | || ||||||||| Sbjct 913 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 854 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | ||||| || | || ||||| || | ||||| || Sbjct 853 TGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTC 794 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || |||||||||||||| Sbjct 793 TTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 762 >seq1041 Length=17511 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| ||||| | || || ||||| ||||||||||| || Sbjct 5246 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 5187 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| || || |||||||||||| || Sbjct 5186 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGG 5127 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | ||||| || | || ||||| Sbjct 5126 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACC 5067 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| ||||| || || || ||||||||||| Sbjct 5066 TCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 5020 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| ||||| | || || ||||| ||||||||||| || Sbjct 5018 CCACCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 4959 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| || || |||||||||||| || Sbjct 4958 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 4899 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | ||||| || | || ||||| Sbjct 4898 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACC 4839 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 4838 TCGAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 4792 >seq1754 Length=9193 Score = 113 bits (124), Expect = 3e-20 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||| || || || ||| |||| | | ||||||||| ||||| || Sbjct 6180 TTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGATC 6121 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGG 34319 || |||||||||||| || | || ||||||||| || ||||| ||| | | | Sbjct 6120 AGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC--CTGGATTTTGGCCTTGACGTTGT 6063 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 | ||||| || | || ||||| || | ||||| || ||||||||||| || || |||| Sbjct 6062 CGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAA 6003 Query 34380 AGATCTGCAT 34389 |||||||||| Sbjct 6002 AGATCTGCAT 5993 >seq2338 Length=9794 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| || ||||| || || || ||| |||| Sbjct 8128 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCC 8187 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| ||| || || || || |||||||||||| ||| | || ||||||||| Sbjct 8188 TCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 8247 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | ||||| || | || ||||| || | ||||| || Sbjct 8248 TGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGACCTCGAGGGTGATCGTC 8307 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || |||||||||||||| Sbjct 8308 TTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 8339 >seq2994 Length=21391 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | |||||||| || | ||| ||| ||||| |||||||| ||||| Sbjct 16528 CCGCCACGGAGGCGGAGCACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGAG 16587 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || || | ||||||||| ||||||||||| |||||||||||| || Sbjct 16588 AGCGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGG 16647 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 16648 ATGCCCTCCTTGTC 16661 >seq262 Length=5824 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| ||||| | || | ||||| || | |||||| || Sbjct 3031 CCACCGCGTAGGCGGAGCACGAGGTGGAGGGTCGACCCCTTCTGGATATGGTAGTCCGAG 3090 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||| |||| ||||| || | |||||||||||| || Sbjct 3091 AGGGTGCGGCCGTCCTCGAGCTGCCTGCCCGCGAAGATTAAGCGCTGCTGGTCGGGCGGG 3150 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||| | ||| | | | | ||||| || | || ||||| Sbjct 3151 ATGCCCTCCTTGTCCTGGATCCTGGCCTTGACGTTGCCGATCGAGTCAGACGGCTCGACC 3210 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||||||||| | || |||||||||||||| Sbjct 3211 TCGAGGGTGATCGTCTTGCCGGTGAGCGCCTTGACAAAGATCTGCAT 3257 >seq2411 Length=24813 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||| || ||||| | || || ||||| ||||||||||| || Sbjct 4427 CCACCGCGGAGGCGCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 4368 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| ||||||||| || || ||||| |||||||| || ||| Sbjct 4367 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGGG 4308 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || || || | | || || Sbjct 4307 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGAGTCCGAAGGCTCCACC 4248 Query 34343 TCCACCGTGATGGTTTTGCC 34362 || | ||||| || ||||| Sbjct 4247 TCAAGGGTGATCGTCTTGCC 4228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323058565454720