Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2836 215 1e-50 seq2059 165 2e-35 seq2376 149 1e-30 seq3275 129 1e-24 >seq2836 Length=15749 Score = 215 bits (238), Expect = 1e-50 Identities = 455/673 (68%), Gaps = 7/673 (1%) Strand=Plus/Minus Query 248770 AACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTT 248829 |||||| | | ||||| | ||| || ||||| | || || || ||||| | |||| Sbjct 9606 AACGCGGAGCGGCTGGATGCGGCGGTTATCTACGACCGCGACTTTGACTACGACTACTTT 9547 Query 248830 GCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGA 248889 | ||||| || || ||||| ||||| || ||||| || | |||| | || || || Sbjct 9546 GGCTTCAAGACTCTCGAGAAGTCGTACCTGCTCAAGATGCACAACAAGGTGGTCGAGCGG 9487 Query 248890 ATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTG 248949 ||||| ||| | ||||| ||| | | || || ||| || | ||| | || | | Sbjct 9486 CCGCAGCAGATGCTCATGCGCGTGTCGTTGGGCATCCACCAGCACGACCTGGATGCGGCG 9427 Query 248950 CTCGAGACGTAC-ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTT 249008 | ||||||||| ||| || |||| || |||||| | || || || || || ||| | || Sbjct 9426 ATTGAGACGTACCACCTGA-TGAGCGAGCGCTGGTTCACGCACGCGACGCCCACGATGTT 9368 Query 249009 CAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACG 249067 |||||| || || | || | ||| || ||||||||| || || | ||| | || | Sbjct 9367 CAACGCGGGCACGCCGCAGCCG-CAGATGTCCTCGTGCTTCCTGCTCTCGATGAAGGAGG 9309 Query 249068 ACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGG 249127 |||| |||| ||||| | || ||||| |||| | ||| |||| || || ||||| Sbjct 9308 ACTCGATCGAGGGCATCTTCGAGACGCTCAAACTGTGCGCGCAGATATCCAAGAGCGCGG 9249 Query 249128 GCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAA 249187 | || ||||| | | || |||||||||| || ||||| ||||||||||| || || Sbjct 9248 GTGGCATCGGCGTGGCGGTGACCAACATCCGCGCCAAGGGCTCGTACATCAAGGGCACGG 9189 Query 249188 ATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCA 249247 || || | || |||| ||| | || || | || ||| || | | | Sbjct 9188 GCGGCACGAGCAACGGCCTCGTTCCCATGCTGCGCGTGTACGACAACACTGCGCGCTACG 9129 Query 249248 TCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACG 249304 || |||||| ||| || || ||||| | |||||| |||| | || ||||| | Sbjct 9128 TCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCGTGTACCTCGAGCCATGGCATG 9069 Query 249305 CCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGC 249364 | || | | || || || ||| |||| ||||| ||||||| ||| | | |||| Sbjct 9068 CGGACGTGTGCGACTTTCTTGACCTGAAGAAGAATCACGGCAAGGAGGAGGCGCGCGCGC 9009 Query 249365 GTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACG 249424 | ||||||||||||| || ||||| | ||| | |||||| |||||| ||||| ||| Sbjct 9008 GCGACCTCTTCTACGCTCTCTGGGTGCCTGACCTCTTCATGAAGCGCGTCGAGGCCAACG 8949 Query 249425 GCGATTGGACGCT 249437 |||| ||| |||| Sbjct 8948 GCGACTGGTCGCT 8936 >seq2059 Length=13280 Score = 165 bits (182), Expect = 2e-35 Identities = 418/635 (66%), Gaps = 3/635 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || ||||| ||||| | ||||| ||||| ||| ||||| ||| |||| || Sbjct 6946 GATTTCGATTACGACTTCTTCGGCTTCAAGACGCTCGAGCGCTCGTACCTCATCAAGATG 6887 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | |||||| | || || || |||||||||||||||||| ||||| | || || ||| Sbjct 6886 CACGGCAAGGTTGTCGAGCGGCCTCAGCACATGTTGATGCGCGTGGCGCTTGGCATCCAC 6827 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||||| ||| | | | |||||||| || ||| || | ||| | || Sbjct 6826 CTCAGCGACATCGAGGCGGCGATTGAGACGTATACGCTCATGTCAGAGAGGTGGTTCACG 6767 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTT 249048 || ||| | ||||| | |||||||| || || ||| ||| || |||||||| Sbjct 6766 CACGCCTCGCCGACCATGTTCAACGCGGGCACGCCCAAGCCGCAGATGTCGTCGTGCTTC 6707 Query 249049 CTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCG 249108 || || ||||| |||||||| |||| ||||| || | |||||| || | | ||| Sbjct 6706 CTCCTCTCCATGGTGGACGACTCCATCGAGGGCATCTACGCCACGCTGAAGCGGTGCGCG 6647 Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168 || || || ||||| || | || || || ||| || || ||| ||| Sbjct 6646 CTCATCTCGAAGGCGGCGGGTGGCGTTGGAATCAGCGCGAGCAATATTCGTGCGTCGGGA 6587 Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTT 249228 ||||| ||||| || || | |||| || | || | || || ||| Sbjct 6586 AGCTACATTCGCGGTACCAACGGCACCTCCAATGGGCTCATCCCGATGCTGCGCGTCTTC 6527 Query 249229 GAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATG 249285 | ||| || | ||| | |||| ||| || || |||| ||||||||| || Sbjct 6526 AACAACACGGCGCGCTTCGTTTCGCAGGGCGGTGGCAAGCGGCAGGGCTCGTTCGCCGTG 6467 Query 249286 TATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGC 249345 || | || |||||||| || || || | ||||| || | ||||||||| ||||| Sbjct 6466 TACCTCGAGCCGTGGCACGGAGACATCTTCGCCTTCCTCGATCTCAAAAAGAACCACGGC 6407 Query 249346 AACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 || || | | ||||||||||||||||||| || ||||| ||||| | |||||| Sbjct 6406 AAGGAAGAGGCGCGCGCGCGTGACCTCTTCTACGCGCTCTGGGTGCCCGACCTCTTCATG 6347 Query 249406 CGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCT 249440 || ||| ||||| ||| ||| ||| |||| || Sbjct 6346 AAACGTGTCGAGGCCAACGCCGAGTGGTCGCTGCT 6312 Score = 86.0 bits (94), Expect = 1e-11 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520 |||||||| ||| | |||||||||||||||||||| || || | || || || ||| Sbjct 7321 TTCGACAAGATCACTGCGCGCATCAAGAAGCTCTGCTACGGCTTCGAGCCAAAGCACGTG 7262 Query 248521 GATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACA 248580 || | ||| | | || |||||||| | ||||||| || || || || || | Sbjct 7261 GACCCCGTGCGCGTTGCACAGAAAGTCGTGGCGGGCGTGTATGATGGTGTGACGACCGCG 7202 Query 248581 GAACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTA 248639 | |||||| | | || ||||||||||| || | | || ||| ||| || || |||| Sbjct 7201 CAGCTGGACGACCTGGCGGCGGAGACGGCAGCCTTCCTGACGA-CGCAGCATCCACACTA 7143 Query 248640 CTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTT 248699 | | || || | | | |||||||| || | || ||||| |||| || |||| || Sbjct 7142 CGGCCGCCTTGCTGCGCGCATCGCCGTATCCAACCTGCACAAGCAAACCGAAAAGTCCTT 7083 Query 248700 C 248700 | Sbjct 7082 C 7082 >seq2376 Length=33347 Score = 149 bits (164), Expect = 1e-30 Identities = 261/381 (69%), Gaps = 22/381 (6%) Strand=Plus/Minus Query 254016 TTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTG 254075 ||| | || ||||| || || ||||||||||| |||||||| ||| || || || Sbjct 1153 TTCTATGGGCCTCCAGGTACCGGCAAGACGTCCACCATCCTTGCGGCTGCACGGGAGCTC 1094 Query 254076 TTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGG 254135 || ||| ||| || | || ||| | ||||| ||||| || ||||| ||||| Sbjct 1093 TTTGGCAAGGATTACC---GCTCTCGTGTGATGGAGCTCAACGCGTCGGACGAGCGCGGT 1037 Query 254136 TTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTTCGTCGTTCCAA 254195 | | ||||| || ||||||||||| | ||| | || || || | |||||| | || Sbjct 1036 ATTGCGGTCGTGCGTAACAAGATCAAGTCGTTCGCGCAGGTGGCGGTCTCGTCG--CAAA 979 Query 254196 CC-------CGGCTGT----------CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGG 254238 | ||| || ||||| | ||||||| | | || || ||||||| Sbjct 978 CGGATCGTTCGGGCGTGGACGCGCCCCCGCCGTACAAGCTCATCGTGCTTGATGAGGCGG 919 Query 254239 ACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTG 254298 || | |||||| | |||||||| || || || ||||| |||||||||||| |||| | Sbjct 918 ACTCTATGACGACGGACGCGCAATCGGCGCTGCGCCGGACGATGGAGACGTACTCGAAGG 859 Query 254299 TGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTC 254358 ||||||| || ||| | | ||||||||| | ||| | | ||| | || | || || | Sbjct 858 TGACGCGCTTCTGCATCATCTGCAACTACATCTCGCGGCTGATCCCGCCAATAGCCTCGC 799 Query 254359 GGTGCGCCAAGTTTCGATTCA 254379 | ||||||||||| ||||||| Sbjct 798 GCTGCGCCAAGTTCCGATTCA 778 >seq3275 Length=32583 Score = 129 bits (142), Expect = 1e-24 Identities = 339/512 (66%), Gaps = 9/512 (2%) Strand=Plus/Plus Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGT--ACCGTCAACAATCAGCTGAGCTCGT 249043 || || || || ||||||||||||||||| || |||| | | ||||| |||| Sbjct 6118 ACGCACGCGACGCCGACGCTCTTCAACGCGGGCTCACCGCG--CCAGCAGCTTTCGTCGT 6175 Query 249044 GCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGA 249103 |||| || || ||| || | |||||| |||| ||||| | |||||||| ||| Sbjct 6176 GCTTCCTACTCTCCACGCGCGCCGACTCGATCGAGGGCATCTTCGACACGCTCGGCCAGT 6235 Query 249104 CGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGA 249163 || || || || ||||| ||||| ||||| ||||||||| | || ||| Sbjct 6236 GCGCCCGCATCTCGCGCGATGCTGGCGGCATCGGCCTCTCTGTCTCCAACGTGCGCGCGG 6295 Query 249164 AGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGAT 249223 | | ||||||||| | || ||| || |||| ||| | || || Sbjct 6296 CGCGCTCGTACATCCGCTCGAGCGGCGGCGTCTCGTCGGGCCTCGTCCCCATGCTCCGCG 6355 Query 249224 GCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCG 249280 ||| || ||||||| | | | || |||||| ||| || || ||||| | |||| Sbjct 6356 TCTTCGACGCCACCGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCG 6415 Query 249281 CCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACA 249340 | |||| | || ||||| || || | || || ||||| || || |||||| Sbjct 6416 CTGTGTACCTCGAGCCATGGCATGCGGACGTCTTCGACTTCCTCGAGCTGCGCAAGAACC 6475 Query 249341 ACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGT 249400 ||||||| || | | ||||| ||||||||||||| || ||||| ||||| | | Sbjct 6476 ACGGCAAGGAAGAGGCGCGCGCGCGCGACCTCTTCTACGCGCTCTGGGTGCCCGACCTCT 6535 Query 249401 TCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCG 249459 ||||| |||||| ||||| ||||||| ||| |||| | | || ||| |||||| Sbjct 6536 TCATGAAGCGCGTCGAGGCCAACGGCGAGTGGTCGCTCTTCTGCCCTGACGAGTGCCCCG 6595 Query 249460 GACCTCATCGATCTACACGGCGCCGACTTCGA 249491 | |||| |||| ||||| |||| |||||| Sbjct 6596 G-CCTCGTCGACACCCACGGTGCCGCCTTCGA 6626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073719458959616