Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2705 89.7 4e-13 seq2338 86.0 5e-12 seq600 82.4 6e-11 >seq2705 Length=11910 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG-TCGTC 45186 |||| || | ||||||||||| || |||| ||||||| || | | | || ||||| Sbjct 7507 ACCAGATGGATCGTGCTCTCCTGCTCGATGTCGTAGTCGC-CAATGGTCTTCCGGTCGTC 7449 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || ||| |||| || | |||||| | | ||| || | |||||||||||| Sbjct 7448 AAGCTGCTTGCCGCCGAAGATGAGCCGCTGCTCCTTGGGCGGGATGCCCTCCTTGTCCTG 7389 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || |||||| | || | | || || ||||||| ||||| || | |||||| Sbjct 7388 AATCTTGGCCTTAACGTCGGCGATCGTATCGCCTTCCTCCACGTCCACCGTCACCGTCTT 7329 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 |||| || ||||| | ||||| || || |||| Sbjct 7328 CCCCGACAACGTCTTGATGAAGATCTGGCTGCTGCC 7293 >seq2338 Length=9794 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||| || || ||| |||| || || || ||||| || Sbjct 8148 CTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGGAGGCCGGCAAA 8207 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| |||||||| || | |||||||||||| || || ||| || | Sbjct 8208 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC-GT 8266 Query 45265 CGCCACGCT-GTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 ||| | |||| | ||| ||||| | ||| ||||||||||| || || ||||| | Sbjct 8267 TGCCGATCGAGTCCGCCGTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGA 8326 Query 45324 CAAAGATTTGCATG 45337 ||||||| |||||| Sbjct 8327 CAAAGATCTGCATG 8340 >seq600 Length=13348 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || ||||| ||||||||| |||||||||||| ||| |||| |||| ||| Sbjct 11081 ACCAAATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCAAGCGACCGTCCTCC 11140 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || | || || || || || | |||||| || || || ||||||||| || Sbjct 11141 AGCAGCTTGCCCGCAAAGATGAGGCGCTGTGCCTCCGGGGGGGTGCCCTCCTTGGCCTGG 11200 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || || | | | |||| ||| || | | || || ||||| Sbjct 11201 ATCTTTGCCTTGACGCCCTCGATGGTGTCAGAGTGCTCGACATTTAGCGTGATGGTCTTT 11260 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||| |||||||| |||||| Sbjct 11261 CCATTCAGCGTCTTGACAAAGATCTGCATG 11290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395058771291652