Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2059 122 1e-22 >seq2059 Length=13280 Score = 122 bits (134), Expect = 1e-22 Identities = 379/585 (65%), Gaps = 4/585 (1%) Strand=Plus/Plus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || ||||||| || || | || ||||||||| ||| ||| || |||||||| ||| Sbjct 6294 GGGCATTCATTGGGGCAGAGCAGCGACCACTCGGCGTTGGCCTCGACACGTTTCATGAAG 6353 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 || || || | ||| || || || || || | | | || || || || Sbjct 6354 AGGTCGGGCACCCAGAGCGCGTAGAAGAGGTCACGCGCGCGCGCCTCTTCCTTGCCGTGG 6413 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||||| ||||||||||| || | || || |||||||| || | ||| | ||| Sbjct 6414 TTCTTTTTGAGATCGAGGAAGGCGAAGATGTCTCCGTGCCACGGCTCGAGGTACACGGCG 6473 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | || |||| ||| || ||||| | | | | || ||||| || | || Sbjct 6474 AACGAGCCCTGCCGCTTGCCACCGCCCTGCGAAACGAAGCGCGCCGTGTTGTTGAAGACG 6533 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | || ||| || || | || || || | || ||||||||| || |||| ||| Sbjct 6534 CGCAGCATCGGGATGAGCCCATTGGAGGTGCCGTTGGTACCGCGAATGTAGCTTCCCGAC 6593 Query 63522 GCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 ||||||||||| || |||| || | || || ||| || ||||| | |||| Sbjct 6594 GCACGAATATTGCTCGCGCTGATT--CCAACGCCACCCGCCGCCTTCGAGATGAGCGCGC 6651 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | || || | |||| | |||||||| || ||| || || | |||| || || || | Sbjct 6652 ACCGCTTCAGCGTGGCGTAGATGCCCTCGATGGAGTCGTCCACCATGGAGAGGAGGAAGC 6711 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | ||||| || | | || ||||| || || | ||| || || |||||||| | Sbjct 6712 ACGACGACATCTGCGGCTTGGGCGTGCCCGCGTTGAACATGGTCGGCGAGGCGTGCGTGA 6771 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63759 |||| | || || | || | ||||||||||| || | || || || | | || | Sbjct 6772 ACCACCTCTCTGACATGAGCGTATACGTCTCAATCGCCGCCTCGATGTCGCTGAGGTGGA 6831 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAA 63804 | || | || || ||||| |||||||||||||| | || |||| Sbjct 6832 TGCCAAGCGCCACGCGCATCAACATGTGCTGAGGCCGCTCGACAA 6876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629790738279360