Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2836 114 1e-20 seq1787 86.0 6e-12 >seq2836 Length=15749 Score = 114 bits (126), Expect = 1e-20 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 152752 GCGTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCG 152811 |||| || | ||||||||||||||||||||||| | ||||||||| | ||||| || Sbjct 7752 GCGTGCGCAGGTAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTAGAAGTGCATCG 7811 Query 152812 ACGCCATCTTAGCCAAAGTAGGG-TCGGCCATGTACACGTTAAACGATTGACTTTGATCA 152870 ||| | ||| | || ||| ||| |||| |||| ||||||| ||||| || ||||| || Sbjct 7812 ACGAGAGCTT-GGCATAGTTGGGCTCGGTCATGAACACGTTGAACGACTGGCTTTGGTCG 7870 Query 152871 ATAAATGCGCCTCTATCTGCTGCCATGTCGAT 152902 || || ||||| | || || ||||||||||| Sbjct 7871 ATGAACGCGCCGCGGTCGGCGGCCATGTCGAT 7902 >seq1787 Length=9008 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| ||||| | |||| ||| |||||||| || || Sbjct 958 GTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 899 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT----TTG 139683 ||| ||||||| || ||||| ||||| || ||||| || ||||| ||| || ||| Sbjct 898 GCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 839 Query 139684 TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAA 139743 | || | || | ||| | ||||| ||||| | ||| | |||||||||||| | Sbjct 838 ACGTTGCCGATCGA----GTCCGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAG 783 Query 139744 CGTTTTTACGAATATTTGCAT 139764 ||| || || || || ||||| Sbjct 782 CGTCTTGACAAAGATCTGCAT 762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496042842870400