Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2059 141 1e-28 >seq2059 Length=13280 Score = 141 bits (156), Expect = 1e-28 Identities = 409/627 (65%), Gaps = 12/627 (2%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||| ||| | ||||| |||| | || || ||||| | || || | || |||| Sbjct 6261 TCGAAGTCGGCGCCCCAGCTGTCGTAGAGCCCCGGGCATTCATTGGGGCAGAGCAGCGAC 6320 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 ||||| | | ||| || |||||||| ||||| || || | ||| || || || Sbjct 6321 CACTCGGCGTTGGCCTCGACACGTTTCATGAAGAGGTCGGGCACCCAGAGCGCGTAGAAG 6380 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 || || | | | ||| || || || |||||||| ||||||||||| || | Sbjct 6381 AGGTCACGCGCGCGCGCCTCTTCCTTGCCGTGGTTCTTTTTGAGATCGAGGAAGGCGAAG 6440 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 || || |||||||| || | ||| | ||| | ||| | || ||| || ||| Sbjct 6441 ATGTCTCCGTGCCACGGCTCGAGGTACACGGCGAACGAGCCCTGCCGCTTGCCACCGCCC 6500 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 || | | | | || ||||| || | || | || ||| || || | |||||||| Sbjct 6501 TGCGAAACGAAGCGCGCCGTGTTGTTGAAGACGCGCAGCATCGGGATGAGCCCATTGGAG 6560 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT--TGATAGAC 80218 || || ||||| ||| || |||||||| ||||||||||| || |||| | Sbjct 6561 GTGCCGTTGGTACCGCGAATGTAGCTTCCCGACGCACGAATATTGCTCGCGCTGATT--C 6618 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | | || || ||| || ||||| | ||||| || || | ||| | |||||||||| Sbjct 6619 CAACGCCACCCGCCGCCTTCGAGATGAGCGCGCACCGCTTCAGCGTGGCGTAGATGCCCT 6678 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG--- 80335 | ||| || || | |||| || || || || ||||| || || || | Sbjct 6679 CGATGGAGTCGTCCACCATGGAGAGGAGGAAGCACGACGACATCTG----CGGCTTGGGC 6734 Query 80336 -TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 | ||||| || || | ||| || || |||||||| ||||| | || |||| || | Sbjct 6735 GTGCCCGCGTTGAACATGGTCGGCGAGGCGTGCGTGAACCACCTCTCTGACATGAGCGTA 6794 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||||||||| || | || || || | | || || || | ||| || ||||| ||| Sbjct 6795 TACGTCTCAATCGCCGCCTCGATGTCGCTGAGGTGGATGCCAAGCGCCACGCGCATCAAC 6854 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTG 80481 ||||||||||| | || || | |||| Sbjct 6855 ATGTGCTGAGGCCGCTCGACAACCTTG 6881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718238165835680