Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2059 136 5e-27 >seq2059 Length=13280 Score = 136 bits (150), Expect = 5e-27 Identities = 390/597 (65%), Gaps = 12/597 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || |||||||| || || | || |||||||| | | | | || |||||||| Sbjct 6291 CCCGGGCATTCATTGGGGCAGAGCAGCGACCACTCGGCGTTGGCCTCGACACGTTTCATG 6350 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||| || || | ||| || || || || || | | | ||| || || || Sbjct 6351 AAGAGGTCGGGCACCCAGAGCGCGTAGAAGAGGTCACGCGCGCGCGCCTCTTCCTTGCCG 6410 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 |||||||| ||||||||||| || | || || |||||||| || | ||| | | Sbjct 6411 TGGTTCTTTTTGAGATCGAGGAAGGCGAAGATGTCTCCGTGCCACGGCTCGAGGTACACG 6470 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | ||| |||| ||| || ||||| | | | | || ||||| || | Sbjct 6471 GCGAACGAGCCCTGCCGCTTGCCACCGCCCTGCGAAACGAAGCGCGCCGTGTTGTTGAAG 6530 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | || ||| || || | |||||||| | || ||||| ||| || |||||||| Sbjct 6531 ACGCGCAGCATCGGGATGAGCCCATTGGAGGTGCCGTTGGTACCGCGAATGTAGCTTCCC 6590 Query 72274 CTGGCACGAATATTGCTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 |||||||||||||| |||| || | || || ||| || ||||| | | Sbjct 6591 GACGCACGAATATTGCTCGCGCTGATT--CCAACGCCACCCGCCGCCTTCGAGATGAGCG 6648 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 |||| || || | ||| | ||||||||||| || || |||| |||| || || | Sbjct 6649 CGCACCGCTTCAGCGTGGCGTAGATGCCCTCGATGGAGTCGTCCACCATGGAGAGGAGGA 6708 Query 72392 AACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAGCG 72447 | || ||||| || || || | | ||||| || || | ||| || || ||| Sbjct 6709 AGCACGACGACATCTG----CGGCTTGGGCGTGCCCGCGTTGAACATGGTCGGCGAGGCG 6764 Query 72448 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCAT 72507 ||||| ||||| | || |||| || | ||||||||||| || | || || || | Sbjct 6765 TGCGTGAACCACCTCTCTGACATGAGCGTATACGTCTCAATCGCCGCCTCGATGTCGCTG 6824 Query 72508 TGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 | || || || | ||| || ||||| ||||| |||||||| | || || | |||| Sbjct 6825 AGGTGGATGCCAAGCGCCACGCGCATCAACATGTGCTGAGGCCGCTCGACAACCTTG 6881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671110575913120