Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2836 170 3e-37 seq2059 150 3e-31 seq3275 134 2e-26 seq1011 104 3e-17 >seq2836 Length=15749 Score = 170 bits (188), Expect = 3e-37 Identities = 354/516 (69%), Gaps = 12/516 (2%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAGGGCGG 96883 ||||| || || ||||| | ||||| | || || | || ||||| |||||||| Sbjct 9174 GGCCTCGTTCCCATGCTGCGCGTGTACGACAACACTG-CGCGCTACGTCGACCAGGGCGG 9116 Query 96884 CAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGA 96943 | || || ||||| | ||||| ||| | || || ||||| |||||||| | || Sbjct 9115 CGGCAAGCGCAAGGGCGCCTTCGCCGTGTACCTCGAGCCATGGCATGCGGACGTGTGCGA 9056 Query 96944 CTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTA 97003 |||| | || || || || ||| || ||||| || || | ||| | || || Sbjct 9055 CTTTCTTGACCTGAAGAAGAATCACGGCAAGGAGGAGGCGCGCGCGCGCGACCTCTTCTA 8996 Query 97004 TGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCT 97063 || ||||||||||| || | ||||||||||||||| | | | ||| ||||| || Sbjct 8995 CGCTCTCTGGGTGCCTGACCTCTTCATGAAGCGCGTCGAGGCCAACGGCGACTGGTCGCT 8936 Query 97064 AATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAA 97123 |||||||| || || || ||||| ||| |||||||||| | |||||||| Sbjct 8935 CATGTGCCCGCACGAGTGCCCTGGTCTCGTCGACAGCTGGGGCGAGGCCTTTGAGGCTCT 8876 Query 97124 GTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAG----AAC 97179 |||||| |||||| ||||||| | | || || | ||| || ||| || | | | Sbjct 8875 GTACACCCAGTACGAGAAAGAGGG-CAAGGCGCGA-AAGAG-CG-TGCCCGCGCAGCAGC 8820 Query 97180 TGTGGAAGGCCATCGT-GACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 ||||| ||||| | ||| | ||| | ||||| || || |||||||| || |||||| Sbjct 8819 TGTGGTTCACCATCCTCGAC-TCGCAGATCGAGACGGGCACGCCGTACATCCTGTACAAG 8761 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || ||| || ||||| |||||| | || | ||||| ||| ||||||| ||| Sbjct 8760 GACGCCGCCAACCGCAAGTCCAACCAGCAGAACCTTGGCACGATCCGCTGCTCCAACCTG 8701 Query 97299 TGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| || || | |||||| |||| ||||||||| Sbjct 8700 TGCACCGAGATCATCGAGTACACCTCGCCGGACGAG 8665 Score = 100 bits (110), Expect = 4e-16 Identities = 113/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 98073 CTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTG 98132 || ||||| ||||| |||||| | || | | ||| ||||| || || |||||||| || Sbjct 7905 CTCATCGACATGGCCGCCGACCGCGGCGCGTTCATCGACCAAAGCCAGTCGTTCAACGTG 7846 Query 98133 TACGTTGCCGAGCCCACCTA---CAGTCGTATGACTTCGATACACTTTTACGCATGGAAC 98189 | | | ||||||||| ||| || | | | ||||| ||||| |||| ||||| Sbjct 7845 TTCATGACCGAGCCCAACTATGCCAAGC---TCTCGTCGATGCACTTCTACGGCTGGAAG 7789 Query 98190 AAGGGCCTCAAGACGGGCATGTACTATCTG 98219 |||||||||||||||||||||||||| ||| Sbjct 7788 AAGGGCCTCAAGACGGGCATGTACTACCTG 7759 >seq2059 Length=13280 Score = 150 bits (166), Expect = 3e-31 Identities = 362/544 (67%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| | ||| ||| || | || ||||| | | | ||| | | | || Sbjct 6571 ACCAACGGCACCTCCAATGGGCTCATCCCGATGCTGCGCGTCTTCAACAACACGGCGCGC 6512 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 | |||| | |||||||| || |||| ||| | | ||||| ||| | || || ||| Sbjct 6511 TTCGTTTCGCAGGGCGGTGGCAAGCGGCAGGGCTCGTTCGCCGTGTACCTCGAGCCGTGG 6452 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 |||| ||| | || | ||| |||| | || ||| ||| |||||||| || Sbjct 6451 CACGGAGACATCTTCGCCTTCCTCGATCTCAAAAAGAACCACGGCAAGGAAGAGGCGCGC 6392 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | ||| | || || || ||||||||||| || | |||||||| || ||| | | | Sbjct 6391 GCGCGTGACCTCTTCTACGCGCTCTGGGTGCCCGACCTCTTCATGAAACGTGTCGAGGCC 6332 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 | | | ||| || | |||||| | | || || || | ||| |||||||| Sbjct 6331 AACGCCGAGTGGTCGCTGCTCTGCCCCAATGAATGCCCGGGGCTCTACGACAGCTGGGGC 6272 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA--- 97163 | || || ||||| |||| || |||||| | |||||| | | | | || Sbjct 6271 GCCGACTTCGAGGCGCTGTACGAGGGGTACGAGAAGGAGGGCA---AGGCGCGGCGCACC 6215 Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGT-GACGGCTCAGGTAGAGACTGGAACTCC 97222 ||| | |||| || |||||| ||||| | ||| | ||| | ||||| || || || Sbjct 6214 GTCAAAGCACAGGACCTGTGGTTCGCCATTCTCGACT-CGCAGATCGAGACGGGCACGCC 6156 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 |||||| || |||||||| ||| |||||||| |||||| | || ||||||| || Sbjct 6155 GTACATCCTGTACAAGGACGCCGCCAATCGCAAGTCCAACCAGCAGAACCTGGGCACGAT 6096 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 | ||||||| ||||||||||| || | |||||| |||| || || ||| |||||| Sbjct 6095 CCGCTGCTCCAACCTGTGCACGGAGATCATCGAGTACACCTCGCCCGATGAGGTGGCAGT 6036 Query 97343 TTGC 97346 ||| Sbjct 6035 GTGC 6032 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 98071 CGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATC 98130 |||| ||||||||||| |||||| | || | || ||| |||||||| || ||||| Sbjct 5292 CGCTCATCGATATGGCCGCCGACCGCGGCGCCTTCATCGACCAGAGCCAGAGCTTCAACG 5233 Query 98131 TGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACA 98190 | | ||| || || | |||| | | | ||||| || || |||| |||||| | Sbjct 5232 TATTCGTGCAGGACCCGAACTACGGCAAGCTCTCGTCGATGCATTTCTACGGATGGAAGA 5173 Query 98191 AGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCAT 98250 ||||||||||||||||||||||||| ||| | | ||| | || || | ||||| || Sbjct 5172 AGGGCCTCAAGACGGGCATGTACTACCTGCGTTCCAAGGCAGCGGCCGACGCCATCAAAT 5113 Query 98251 TTACGGTGGAC 98261 | || || ||| Sbjct 5112 TCACCGTCGAC 5102 >seq3275 Length=32583 Score = 134 bits (148), Expect = 2e-26 Identities = 363/552 (66%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGC 96884 ||||| || || |||||| | | | | | || | | || ||||| ||||||||| Sbjct 6334 GGCCTCGTCCCCATGCTCCGCGTCTTCGACGCCACCGCGCGCTACGTCGACCAGGGCGGC 6393 Query 96885 AATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGAC 96944 || || ||||| | || || ||| | || || ||||| |||||||| || ||| Sbjct 6394 GGCAAGCGCAAGGGCGCCTTCGCTGTGTACCTCGAGCCATGGCATGCGGACGTCTTCGAC 6453 Query 96945 TTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTAT 97004 || ||||| ||||||| ||| ||| |||||||| || || | ||| | || || Sbjct 6454 TTCCTCGAGCTGCGCAAGAACCACGGCAAGGAAGAGGCGCGCGCGCGCGACCTCTTCTAC 6513 Query 97005 GCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTA 97064 || ||||||||||| || | ||||||||||||||| | | | ||| | ||| || Sbjct 6514 GCGCTCTGGGTGCCCGACCTCTTCATGAAGCGCGTCGAGGCCAACGGCGAGTGGTCGCTC 6573 Query 97065 ATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAG 97124 | ||||| ||| || ||||| || ||| | || | | || ||||| | Sbjct 6574 TTCTGCCCTGACGAGTGCCCCGGCCTCGTCGACACCCACGGTGCCGCCTTCGAGGCGCTG 6633 Query 97125 TACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAG----AACT 97180 ||| | |||||||| |||||| | | | | || || ||| || | | || Sbjct 6634 TACGAGCGCTACGAGCGCGAGGGC---AAGGCGCGGCGCACCG-TGCCCGCGCAGCAGCT 6689 Query 97181 GTGG---AAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAA 97237 |||| ||| || | ||| ||| | ||||| || || || ||||| |||||||| Sbjct 6690 GTGGTTCAAG---ATTCTCGAGGCGCAGATCGAGACGGGCACACCCTACATGCTCTACAA 6746 Query 97238 GGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCT 97297 ||| | | || ||| |||||| | ||| | ||||| ||| ||||||| || Sbjct 6747 GGACGCAGCCAACGCCAAGTCCAACCAGCAGCACCTAGGCACGATCCGCTGCTCCAACCT 6806 Query 97298 GTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357 ||||||||| || | |||||| || | || |||||| ||| || ||| || || || Sbjct 6807 GTGCACGGAGATCATTGAGTACACCGCGCCCGACGAGGTGGCCGTGTGCAACCTCGCCTC 6866 Query 97358 GGTCAATCTGCC 97369 | || ||||| Sbjct 6867 GATCGCGCTGCC 6878 Score = 87.8 bits (96), Expect = 3e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 98073 CTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTG 98132 |||||||| ||||| |||||| | || | || ||| |||||||| || ||| |||| || Sbjct 7678 CTGATCGACATGGCCGCCGACCGCGGCGCCTTCATCGACCAGAGCCAGTCGCTCAACCTC 7737 Query 98133 TACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAG 98192 | | | ||||| |||| || | | | ||||| ||||| || ||||||| Sbjct 7738 TTCATCAAGGAGCCTACCTTCACCCAGCTCTCGTCGATGCACTTCCACTCATGGAAGCGT 7797 Query 98193 GGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCAT 98245 |||||||||||||| | ||||| ||| | || || | || ||| | ||||| Sbjct 7798 GGCCTCAAGACGGGTCTCTACTACCTGCGCACGCAGCCCGCGACCGAGGCCAT 7850 >seq1011 Length=10758 Score = 104 bits (114), Expect = 3e-17 Identities = 366/559 (65%), Gaps = 22/559 (4%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT--GT 125079 ||||||||||| || ||| ||||||||||||||| | ||| | || || | Sbjct 4241 TGGGAAATGTATAAGAAGCACGTGGCCTCCTTTTGGACAACCTCGGAGATTGACCTTGGG 4300 Query 125080 CCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGC 125139 || ||||||| |||| ||| | ||| | || | |||||| | || || ||| Sbjct 4301 CC--GGACCTGCACGACTGGAA---TCGACTTACCAAGGGCGAGCGACACTTCATCACGC 4355 Query 125140 ACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGA 125198 || | | |||||||| || | || || || ||||| ||| ||||| | || ||| Sbjct 4356 ACGTGCTCGCCTTCTTCGCGGCGTCGGACGGCATCGTTGTCGAGAATCTCGCCGA-ACGC 4414 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 |||| || || | || |||| | ||||| ||||| ||||| ||| ||| Sbjct 4415 TTCTGCGCCGACGTGCAGCTGCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCGATG 4474 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315 |||||| | |||||||| | |||| || || |||| |||| | |||| | | Sbjct 4475 GAGAACATCCACTCGGAGACGTACAGCCTGCTCATCGACACGTACGTGAGCGACGATGCC 4534 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | || || | |||||| | || ||| || |||||| | | | ||||| Sbjct 4535 GAGCGG---CAGAGGCTCTTCCAGGCGATCAACGAGGTGCCCGCGGTGCAGGCCAAGGCG 4591 Query 125376 CAATGGGTGATTCGGTGGATC-GATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 |||| | | |||||| | | ||| | | || | || | | || |||| Sbjct 4592 GCCTGGGCGCTCAAATGGATCCGCT--CGA--ACGCGTCCTTTGCGCAGCGCCTCGTGGG 4647 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCA 125493 || || ||| |||||||||||||| || | ||| |||| | |||| ||||||| Sbjct 4648 GTTTGCATGCGTCGAGGGCATCTTCTTCAGTGGCTCGTTCTGCGCGC-TCTTCTGGCTCA 4706 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||||||||| |||||||| || || ||| | |||||| | || || || ||||||| Sbjct 4707 AGAAGCGCGGCCTCATGCCGGGGCTCACGTTCTCGAACGAGCTCATCTCGCGCGACGAGG 4766 Query 125554 GCCTACACTGTGACTTTGC 125572 | || ||||| |||||||| Sbjct 4767 GTCTGCACTGCGACTTTGC 4785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741027593825120