Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3311 161 9e-35 >seq3311 Length=43904 Score = 161 bits (178), Expect = 9e-35 Identities = 261/368 (71%), Gaps = 8/368 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCT-C 5559 |||||||| || ||||| ||||| ||||| | || | ||||||||| || ||| | Sbjct 25520 ACGCCCGTCGATCCGAAGCCGCCAGCGCCGCGCTCGGAGTCGTCCAGGT-CGTCACAGAC 25462 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| ||||| | | |||||| | ||||||||| || |||||||| ||| Sbjct 25461 CACCACGTCGGGTGTCACGATCCGCTCGAGCACCAGCTGCGCGATCCGGTCGCCGCGCTT 25402 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 || | ||||| | | | || ||||| || || |||||||| |||||||||||| Sbjct 25401 CACTGCAAAATCCTCCTTGGCGTGATTGAAGAGGACGACGCCCACTGGGCCGCGGTAGTC 25342 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 |||||| || ||||| || ||| |||||||| | ||||||||| ||||| |||||||| Sbjct 25341 GGCGTCGATGACGCCTGCACCCGTATCGATGAAATTCTTGACCGCGAGGCCCGAGCGGGG 25282 Query 5740 AGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCG 5799 || | ||| ||||| || ||||| | ||| ||| ||||| || || | | Sbjct 25281 CGCGATGCGCCCGTACGTGCCCTCGGGGCACGCGATCGACAGATCCGTCTTCA-CAATGG 25223 Query 5800 CC-GACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGC--AGAGGTCGTACCCGGCCGC 5856 || |||| || |||| |||||||||| |||| || |||||||||| ||||| | Sbjct 25222 CCTTGCCGCAAGCGGGGATGATGCAGTCG--TGCGCCGCGGAGAGGTCGTAGCCGGCGGA 25165 Query 5857 CCGCGGGG 5864 |||| || Sbjct 25164 GCGCGCGG 25157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430036516725344