Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2180 86.0 4e-12 seq1077 86.0 4e-12 >seq2180 Length=33922 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 44399 CCAGAGATGGGCGACAAGTTTGCGTCG-TTCACGGCGCAAAAGGG-GACATGCGGAGCCG 44456 |||||| | ||||||||||| ||||| |||||| |||||||| | ||| ||| Sbjct 12315 CCAGAGCTAGGCGACAAGTTCTCGTCGCGCCACGGC-CAAAAGGGCGTCAT-CGGTCGAA 12258 Query 44457 TCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCC-GACCTCATCATC 44515 || || | ||||||||| |||||||| || | | ||| |||||| ||| ||||||| Sbjct 12257 TCGTGCCGCAGGAGGACCTGCCCTTC-ACTGACATGGGCGTGTGCCCGGACATCATCATG 12199 Query 44516 AACCCCCACGCCTTTCCCTCCAGGATGACCGT 44547 ||||| |||| ||| ||||| | |||||||| Sbjct 12198 AACCCGCACGGCTTCCCCTCGCGCATGACCGT 12167 >seq1077 Length=21007 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 44399 CCAGAGATGGGCGACAAGTTTGCGTCG-TTCACGGCGCAAAAGGG-GACATGCGGAGCCG 44456 |||||| | ||||||||||| ||||| |||||| |||||||| | ||| ||| Sbjct 19791 CCAGAGCTAGGCGACAAGTTCTCGTCGCGCCACGGC-CAAAAGGGCGTCAT-CGGTCGAA 19734 Query 44457 TCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCC-GACCTCATCATC 44515 || || | ||||||||| |||||||| || | | ||| |||||| ||| ||||||| Sbjct 19733 TCGTGCCGCAGGAGGACCTGCCCTTC-ACTGACATGGGCGTGTGCCCGGACATCATCATG 19675 Query 44516 AACCCCCACGCCTTTCCCTCCAGGATGACCGT 44547 ||||| |||| ||| ||||| | |||||||| Sbjct 19674 AACCCGCACGGCTTCCCCTCGCGCATGACCGT 19643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340123455803076