Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq600 93.3 4e-14 seq1787 89.7 5e-13 >seq600 Length=13348 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCAT--AGTGTTGG 94850 |||| |||||| || | || || ||||| || | ||| || ||| || || | | Sbjct 11075 CGCAGCACCAAATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCAAGCGACCG 11134 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||||| | || || ||||||| | | || || || || | || || | Sbjct 11135 --TCCTCCAGCAGCTTGCCCGCAAAGATGAGGCGCTGTGCCTCCGGGGGGGTGCCCTCCT 11192 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 || | | || |||||||||||| | ||| ||||||| ||| ||||| | | ||||| Sbjct 11193 TGGCCTGGATCTTTGCCTTGACGCCCTCGATGGTGTCAGAGTGCTCGACATTTAGCGTGA 11252 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| |||||| | || || || |||||||||||||||| Sbjct 11253 TGGTCTTTCCATTCAGCGTCTTGACAAAGATCTGCATGC 11291 >seq1787 Length=9008 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| ||||||| | | ||||| || || || || || || ||| Sbjct 916 TCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 857 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| ||||| | ||| | | ||||| || | ||||| Sbjct 856 TCCTGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATC 797 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || |||||||||||||||| Sbjct 796 GTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATGC 760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448272080380320