Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3286 154 2e-33 seq2637 154 2e-33 seq1696 149 1e-31 >seq3286 Length=63380 Score = 154 bits (170), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||||||||| || | Sbjct 37032 CGCCAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 37090 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| |||||||| |||||||| |||| || | |||| || |||| Sbjct 37091 TCCGCCGTCTTGCTCGCCGTGGTGGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 37150 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| ||||| || ||| |||| Sbjct 37151 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTGATCCGCGATGCGGTCACCTACACCG 37210 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| ||||||| |||| || || | || || || | Sbjct 37211 AGCACGCCCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 37270 Query 16671 GCCG 16674 |||| Sbjct 37271 GCCG 37274 >seq2637 Length=52787 Score = 154 bits (170), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||||||||| || | Sbjct 18309 CGCCAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 18251 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| |||||||| |||||||| |||| || | |||| || |||| Sbjct 18250 TCCGCCGTCTTGCTCGCCGTGGTGGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 18191 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || ||| || ||| |||| Sbjct 18190 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTGATCCGCGACGCTGTCACCTACACCG 18131 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| ||||||| |||| || || | || || || | Sbjct 18130 AGCACGCCCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 18071 Query 16671 GCCG 16674 |||| Sbjct 18070 GCCG 18067 >seq1696 Length=13376 Score = 149 bits (164), Expect = 1e-31 Identities = 181/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||||||||| || | Sbjct 5763 CGCCAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 5705 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| |||||||| |||||||| |||| || | |||| || |||| Sbjct 5704 TTCGCCGTCTTGCTCGCCGTGGTGGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 5645 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| ||||| || ||| |||| Sbjct 5644 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTGATCCGCGATGCGGTCACCTACACCG 5585 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| ||||||| |||| || || | || || || | Sbjct 5584 AGCACGCCCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 5525 Query 16671 GCCG 16674 |||| Sbjct 5524 GCCG 5521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072080384516