Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq3345 794 0.0 >seq3345 Length=67807 Score = 794 bits (880), Expect = 0.0 Identities = 756/964 (78%), Gaps = 2/964 (0%) Strand=Plus/Minus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 ||||| || ||||||| ||| | || || || ||| | || || | |||||||| Sbjct 46425 TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTC 46366 Query 135425 GGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTTA-TTGTTGCTTTCAT 135483 || || ||| | |||||||| || ||||| | || |||| || ||||||| || Sbjct 46365 GGTTGTCTAATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTAT 46307 Query 135484 CGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTA 135543 ||| |||||||| || ||||| || || ||||| || || ||||||||||||||| | || Sbjct 46306 CGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTA 46247 Query 135544 CGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTT 135603 |||||| |||||||||||||||||||| | || | ||||| ||||| ||||||| Sbjct 46246 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTT 46187 Query 135604 CTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCA 135663 ||| || ||||||||||||||||| | |||||||||||||| || |||||| |||| || Sbjct 46186 CTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCA 46127 Query 135664 ACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACT 135723 |||||| || ||||||||| | || ||||| | ||||||| ||||| |||||||| || Sbjct 46126 ACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCT 46067 Query 135724 CTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGC 135783 |||||||| || |||||||| || ||||| ||||| |||| |||||| || || || || Sbjct 46066 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGC 46007 Query 135784 TGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCC 135843 || |||| || ||| | ||||||| | || |||||||||||| ||||||||||| Sbjct 46006 AGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCC 45947 Query 135844 GCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCT 135903 || || || ||||| ||||| |||| ||||||||| ||||| || || |||||||| || Sbjct 45946 TCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCT 45887 Query 135904 CATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGC 135963 ||||| || ||||||||| | || |||||||| || |||||||||||||| ||||| || Sbjct 45886 TATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGC 45827 Query 135964 TATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCA 136023 |||||| || ||||| || || || ||| | ||||| || |||||| ||||| Sbjct 45826 TATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGC 45767 Query 136024 GAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGG 136083 ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 45766 TAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGG 45707 Query 136084 TTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTT 136143 |||||| |||||||| |||||||||| || || ||||||||||| ||| | || ||||| Sbjct 45706 TTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTT 45647 Query 136144 TTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGAT 136203 |||| | ||||||||| || || ||||||||||| | | |||| ||| |||| || Sbjct 45646 CGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTAT 45587 Query 136204 GGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGT 136263 ||| |||||||| || || ||||||||||||||||| ||||| ||| |||||||||| Sbjct 45586 GGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGT 45527 Query 136264 ACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGA 136323 | ||||||| ||||| || | || || ||| | || |||||||| || |||||||| Sbjct 45526 AATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGA 45467 Query 136324 GCGT 136327 |||| Sbjct 45466 GCGT 45463 Score = 666 bits (738), Expect = 0.0 Identities = 759/1015 (75%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 137865 TTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGA 137924 |||||| | | ||||||||| | || || || || || || || || || ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 137925 CTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTT 137984 || || || || || ||| | | || | ||||| ||||| ||||| | || || Sbjct 59853 CTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTC 59912 Query 137985 GTTACAAGCTGGTACACCCACGGGTTGGC--GTCTAGTTATCTTGAAGGCGCTAATTTCC 138042 || ||| |||||||| ||||| | || || | ||| || ||||| ||| |||| Sbjct 59913 GTAACATCTTGGTACACTCACGGTCTAGCAAGT-TCGTTC-CTAGAAGGATGTAACTTCC 59970 Query 138043 TCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 138102 | || || ||||| || ||||||||| | ||||||||| || || || || | |||| Sbjct 59971 TAACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGG 60030 Query 138103 GTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTG 138162 | ||||| | ||||| || ||| || ||||||||| |||| || || ||| ||||| Sbjct 60031 GACCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTA 60090 Query 138163 TGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTC 138222 | || || ||||| | ||| || | ||||| ||| ||| | |||||||||||| ||| Sbjct 60091 TTGCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTC 60150 Query 138223 GTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCG 138282 || | ||||| || ||||| |||||||||||||| ||||||||||| ||||| || |||| Sbjct 60151 GTTTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCG 60210 Query 138283 TCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTG 138342 | | || ||||| | || ||||| |||||| | |||||||||||||| || |||| Sbjct 60211 TTACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTG 60270 Query 138343 GTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCA 138402 |||| || ||||| ||||| ||||| | ||||| || |||||||| |||||||| || | Sbjct 60271 GTGTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTA 60330 Query 138403 ACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTC 138462 |||| || || |||||||||||||| ||||| ||||||||||| | || |||||||||| Sbjct 60331 ACCCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTC 60390 Query 138463 ATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAG 138522 ||||||| || ||||| || ||| | | |||||||| || | || ||||| | Sbjct 60391 ATGGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTG 60450 Query 138523 CATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGT 138582 |||| || || ||| |||||| || || |||||||||||||| ||||||| ||||| Sbjct 60451 CATTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGT 60510 Query 138583 CGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTG 138642 | || || ||||| |||| || ||| ||||||||| | |||||||| ||||| || | Sbjct 60511 CTCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCG 60570 Query 138643 TTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTAC 138702 | || || ||| | ||||| ||| || |||||| | ||| | || || ||||| | Sbjct 60571 TACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGC 60630 Query 138703 GAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCT 138762 | || || |||||||| |||||||| || | || |||||||| ||||||||||| || | Sbjct 60631 GTGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACAT 60690 Query 138763 TCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATC 138822 ||||||| || |||| ||||| ||||||||| | ||||| ||||||||| | |||| Sbjct 60691 TCTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATC 60750 Query 138823 AACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||||||| |||||||| | || ||||| || ||| | ||| | || ||||| || Sbjct 60751 AACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCT 60805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627941217164800