Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq3345 587 2e-163 >seq3345 Length=67807 Score = 587 bits (650), Expect = 2e-163 Identities = 757/1037 (73%), Gaps = 12/1037 (1%) Strand=Plus/Minus Query 19280 CTGGCAGAAGTTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTT 19339 |||| || | || || | ||| |||| || |||||| | || || | |||||||| Sbjct 46426 CTGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTT 46367 Query 19340 TGGAGTACTTATGATTCCT----TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCT 19395 || || ||| | ||| | ||||| |||| | | ||| | |||| || | Sbjct 46366 CGGTTGTCTAATGTTCCCTACTCTACTTAC-AGCTATTTCAGCTTACGTTATT---GCTT 46311 Query 19396 TTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAA 19455 ||||||||||||| || |||||||| ||||| || |||||||||||| | || || || Sbjct 46310 TTATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTAC 46251 Query 19456 TGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGC 19515 | ||||||||||| || || ||||| || ||||||||||| || || || || || | | Sbjct 46250 TTTACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTC 46191 Query 19516 ACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCAT 19575 |||| || || ||||||||||| | | | ||||||||| |||||||||| ||| | | Sbjct 46190 ACTTCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTT 46131 Query 19576 ATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGG 19635 | ||||| ||||| ||||||||||| || || ||| || ||| ||| | |||||| Sbjct 46130 ACCAACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGG 46071 Query 19636 AACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTAT 19695 | || |||||| | |||| ||| | |||||||| | || || | |||| ||| || Sbjct 46070 AGCTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAG 46011 Query 19696 CAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTA 19755 | ||||| ||| || || | | |||||| | || ||||| ||| ||||||| Sbjct 46010 CTGCAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTA 45951 Query 19756 TGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATA 19815 ||||||| ||||||||||||||||| ||||| ||| | ||||||||||| || ||||| | Sbjct 45950 TGCCTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACA 45891 Query 19816 TCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCT 19875 |||||||||| || ||||||||||| ||||||||||| ||||||||||| ||||| |||| Sbjct 45890 TCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCT 45831 Query 19876 CTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTAT 19935 | ||||||||||| | | || ||||| || | ||| ||||| |||||| | | || Sbjct 45830 CAGCTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAAT 45771 Query 19936 CGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCAC 19995 | ||||| || || |||||||| ||||| |||||||| || || || || || || | Sbjct 45770 CTGCTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTC 45711 Query 19996 ACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTAC 20055 |||| ||||| || | | | || ||||| ||||| ||||| || || ||| | | | Sbjct 45710 ACGGTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTC 45651 Query 20056 ATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCA 20115 | ||| | || | | ||| || || ||||| || ||| | || || ||||| | | Sbjct 45650 ACTTCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTA 45591 Query 20116 CTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCA-ACGGA 20174 ||||||| |||||||| || ||||| ||||| ||||||||||| || ||| ||| | || Sbjct 45590 CTATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGAT-TCACAAGGT 45532 Query 20175 AAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATG 20234 ||||| || |||||||| | | || | | ||||| || | ||||||||| Sbjct 45531 CGTGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATG 45472 Query 20235 CACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGAGTCAACAAACA-T 20293 |||||||| || ||||| |||||||| || ||| ||||| | | |||||| | | || | Sbjct 45471 CACGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC-TCTACCAGT 45413 Query 20294 TGCACTAACAGCTCCAG 20310 ||| ||| ||||||| Sbjct 45412 TGCTCTAGTTGCTCCAG 45396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144435747587472