Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3345 758 0.0 >seq3345 Length=67807 Score = 758 bits (840), Expect = 0.0 Identities = 787/1027 (77%), Gaps = 16/1027 (2%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 ||||||| ||| | || ||||| | |||||| | || |||||||||| ||| ||| Sbjct 46416 TTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTA 46357 Query 211630 ATGATCCCATGTCTTCTAGCTGCAA---CAACATGCTTTATCGTAGCATTCATCGCAGCA 211686 ||| |||| ||| || | || | || | | | |||| | | || ||||||||| Sbjct 46356 ATGTTCCCTACTCTACTTACAGCTATTTCAGCTTACGTTATTG---CTTTTATCGCAGCA 46300 Query 211687 CCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAAC 211746 ||||| || |||||||| || |||||||| ||||| |||||||| | | || || ||| Sbjct 46299 CCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAAC 46240 Query 211747 AACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCT 211806 ||||||||||||||||| || |||||| ||||||||| |||||| | |||||||| || Sbjct 46239 AACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCA 46180 Query 211807 ATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTA 211866 ||||||||||| || | | ||||||||||| ||||| |||||| ||||||| | || Sbjct 46179 ATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTT 46120 Query 211867 ATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATAC 211926 | ||||||||| | || || | | || ||||| || | ||||||| ||||| ||| Sbjct 46119 GTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTAC 46060 Query 211927 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTC 211986 ||| ||||||||||||| |||||||||||||||| ||||| || ||| | ||||| | Sbjct 46059 CGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCT 46000 Query 211987 GCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGT 212046 || |||||| | | |||||| ||||||| ||||| |||||||| ||||||||| ||||| Sbjct 45999 GCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGT 45940 Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || || || || |||||||||||| | ||||||||||| || || ||||||||||||||| Sbjct 45939 ATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCAC 45880 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCAC 212166 |||||||| ||| |||||||| ||| | |||||||| | ||||||| ||||||||| Sbjct 45879 CCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCAC 45820 Query 212167 GGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTAT 212226 |||||||| || || || || || ||||||||||| |||| || || ||||| Sbjct 45819 GGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTAC 45760 Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 |||||||||||||| |||||||||||||| || ||||||||||| || || || ||||| Sbjct 45759 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTA 45700 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAA--CAGCAGAAGTTTACACTTCTTCC 212344 ||| | || ||||||| || || ||||||||||| || | | || |||||| ||| Sbjct 45699 GGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTT--CACTTCGTCC 45642 Query 212345 TCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCAT 212404 | | | ||||| || | || | |||||||| ||||||||| | || ||||||| Sbjct 45641 TAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTATGGCAT 45582 Query 212405 TCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTC 212464 |||||||||| || |||||||||||||| |||||||| ||| || |||| || | Sbjct 45581 TCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTAATCA 45522 Query 212465 CTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAA 212524 ||||||| ||| |||||||| | ||||||| |||||||||||||||||||| | | Sbjct 45521 ACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTA 45462 Query 212525 ATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGAGAC---AGAAGTTGCTCTTG 212581 | || ||||||||||| || || ||| ||||| ||| | | ||||||||| | Sbjct 45461 ACGCTCACAACTTCCCTCTAGATCTAG---CTGCTGGTGAGTCTCTACCAGTTGCTCTAG 45405 Query 212582 TTGCTCC 212588 ||||||| Sbjct 45404 TTGCTCC 45398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807520757770720