Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq3345 778 0.0 >seq3345 Length=67807 Score = 778 bits (862), Expect = 0.0 Identities = 788/1020 (77%), Gaps = 8/1020 (1%) Strand=Plus/Minus Query 170657 TGGGACGAGTTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTT 170716 ||||| | || || | ||| | || || ||||| || | | ||| |||||||||| Sbjct 46425 TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTC 46366 Query 170717 GGT-GTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCAT 170775 ||| |||| |||| |||| ||| || || ||| | | || | || | || || || Sbjct 46365 GGTTGTCT-AATGTTCCCTACTCTACTTACAGCTATTTCAGCTTACGTTATTGCTTTTAT 46307 Query 170776 CGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATA 170835 ||| || |||||||| |||||||| || ||| | || |||||||| |||||| | | || Sbjct 46306 CGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTA 46247 Query 170836 TGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTT 170895 || |||||||||||||||||||||||||||||| ||||||||| || || | ||||| Sbjct 46246 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTT 46187 Query 170896 CTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCA 170955 ||| || ||||||||||| || | || || |||||| | |||||||| ||| ||||||| Sbjct 46186 CTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCA 46127 Query 170956 GTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACT 171015 ||||| ||||||||||| | ||||| | | ||| ||||| ||| | ||||||| || Sbjct 46126 ACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCT 46067 Query 171016 ATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGC 171075 || ||| | ||||| ||| | || ||||| ||||| || | |||||| || ||| |||| Sbjct 46066 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGC 46007 Query 171076 AGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCC 171135 ||||| |||||||||| | | || ||| ||||||| ||||| ||||| ||||||||||| Sbjct 46006 AGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCC 45947 Query 171136 ACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACT 171195 ||||||||||| ||||| |||||||||||| | || |||||||| || |||||||| || Sbjct 45946 TCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCT 45887 Query 171196 AATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGC 171255 |||||||| ||||| ||| ||||| || ||| | ||||||||| ||| ||| || Sbjct 45886 TATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGC 45827 Query 171256 AATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCA 171315 ||||||||||||||||| || || ||||||||| | || || ||||||||||| | Sbjct 45826 TATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGC 45767 Query 171316 AAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGG 171375 |||||||| || |||||||| ||||||||||| || || ||||| ||||| ||||| || Sbjct 45766 TAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGG 45707 Query 171376 ATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTT 171435 ||||| ||| | || ||||||| || || |||||||||||||| ||| || | ||||| Sbjct 45706 TTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTT 45647 Query 171436 CTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAAT 171495 | |||| | || | || ||||| || | |||||||| ||||||||| | ||| || Sbjct 45646 CGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTAT 45587 Query 171496 GGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGAT 171555 |||||||||||| ||||| |||||||||||||| |||||||||||| || | || Sbjct 45586 GGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGG---TCG 45530 Query 171556 TGT-ACCAACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCA 171612 ||| | ||||| |||| || |||||||| | ||||||| || |||||||||||||| Sbjct 45529 TGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCA 45470 Query 171613 TGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACAACAGTTGC 171672 || | || || ||||||||||| ||||| ||||| ||| ||||||| | ||||||| Sbjct 45469 CGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTCTCTACCAGTTGC 45410 Score = 547 bits (606), Expect = 8e-151 Identities = 741/1032 (72%), Gaps = 23/1032 (2%) Strand=Plus/Plus Query 171802 TTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTAC 171861 || ||||||| ||| ||||| | || |||||||| ||| | ||||||||||| ||| | | Sbjct 59800 TTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGACTTCTTC 59859 Query 171862 TTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCT 171921 | || || ||||| | |||||| | || |||||| | || | ||||||||| || | Sbjct 59860 TATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTCGTAACAT 59919 Query 171922 CATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAG 171981 | |||||||| || ||| | ||| || | || || ||| ||||| ||||||| | Sbjct 59920 CTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTAACTGCTG 59979 Query 171982 CAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGG 172041 | ||||| || |||| | | ||||||||| ||| | | | ||||||||||| | Sbjct 59980 CTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGACCTGAAG 60039 Query 172042 CACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTAC 172101 ||||||| || | || ||||| ||| | ||||| || ||| ||| | ||| ||| Sbjct 60040 CACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATTGCACTAC 60099 Query 172102 ATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTG 172161 | || ||||| | || |||||| ||||||||||||||||| || | | || | Sbjct 60100 ACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGTTTAGTAG 60159 Query 172162 GGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCT 172221 | || ||||||||||||||| | || ||||| | || || |||||| | | | Sbjct 60160 GTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTTACAGTTT 60219 Query 172222 TTCTAATATATCCATTAGGTC-AGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCA 172280 | ||| | || || ||||||| |||| ||||||||||| ||||| |||||||| || Sbjct 60220 TCCTAGTTTACCCTTTAGGTCAAGCA-AGTTGGTTCTTTGCACCAAGTTTTGGTGTAGCG 60278 Query 172281 GCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTT 172340 ||||| || |||| || | ||| |||| ||||||||||| |||||||| ||||| Sbjct 60279 GCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAACCCATTC 60338 Query 172341 CATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCA 172400 || |||||||| ||||| ||||| |||||||| || ||||||||||| || |||||||| Sbjct 60339 CACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCATGGTGCG 60398 Query 172401 ACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCT 172460 || ||| ||||||| | | ||| || ||| ||| | | Sbjct 60399 ACTGTAGAGAACACTCTTTTCGAA------------------GATGGT--GATGC-TGCG 60437 Query 172461 ACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCT 172520 | |||||| | |||||| ||| ||||| |||||| ||||| ||| ||||||| Sbjct 60438 AACACTTTCCGTGCATTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCA 60497 Query 172521 AACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTC 172580 ||| | |||||||| ||||| |||||| | ||||| || ||||| | | ||||||||| Sbjct 60498 AACCGTTTCTGGTCTCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTC 60557 Query 172581 CTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTT 172640 | ||| | |||||||| || |||||||||||| | || ||||| |||||| | Sbjct 60558 TTCATGCTTTTCGTACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTA 60617 Query 172641 GCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCA 172700 ||||| ||||| | |||||||| || || || |||||| | ||||| ||||||||||| Sbjct 60618 GCACTAAACCTGCGTGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCT 60677 Query 172701 GAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATG 172760 || || ||||| |||||||| || |||| ||||| ||||||||||| | || |||||| Sbjct 60678 GAATTCGAAACATTCTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATG 60737 Query 172761 TCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGC 172820 | | |||||||| ||||| ||||| | ||||| || || || | ||||| || Sbjct 60738 GCTGCACAAGATCAACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGA 60797 Query 172821 AACGCACTATAA 172832 ||||| || ||| Sbjct 60798 AACGCCCTTTAA 60809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570244478035680