Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2059 127 3e-24 >seq2059 Length=13280 Score = 127 bits (140), Expect = 3e-24 Identities = 406/627 (65%), Gaps = 12/627 (2%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||| ||| | ||||| | || || || || ||||||| || || | || |||| Sbjct 6261 TCGAAGTCGGCGCCCCAGCTGTCGTAGAGCCCCGGGCATTCATTGGGGCAGAGCAGCGAC 6320 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 ||||| ||| ||| || |||||||| ||||| || || | ||| || || || Sbjct 6321 CACTCGGCGTTGGCCTCGACACGTTTCATGAAGAGGTCGGGCACCCAGAGCGCGTAGAAG 6380 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 || || | | | || || || || |||||||| ||||||||||| || | Sbjct 6381 AGGTCACGCGCGCGCGCCTCTTCCTTGCCGTGGTTCTTTTTGAGATCGAGGAAGGCGAAG 6440 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 || || |||||||| || | ||| | ||| | || |||| ||| || ||| Sbjct 6441 ATGTCTCCGTGCCACGGCTCGAGGTACACGGCGAACGAGCCCTGCCGCTTGCCACCGCCC 6500 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || | | | | || ||||| || | || | || ||| || || | |||||||| Sbjct 6501 TGCGAAACGAAGCGCGCCGTGTTGTTGAAGACGCGCAGCATCGGGATGAGCCCATTGGAG 6560 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAAT--TGATAGAC 63350 || || ||||| || || |||||||| ||||||||||| || |||| | Sbjct 6561 GTGCCGTTGGTACCGCGAATGTAGCTTCCCGACGCACGAATATTGCTCGCGCTGATT--C 6618 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | | || || ||| || ||||| | ||||| || || | ||| | |||||||||| Sbjct 6619 CAACGCCACCCGCCGCCTTCGAGATGAGCGCGCACCGCTTCAGCGTGGCGTAGATGCCCT 6678 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG--- 63467 | || || |||| |||| || || || || ||||| || || || | Sbjct 6679 CGATGGAGTCGTCCACCATGGAGAGGAGGAAGCACGACGACATCTG----CGGCTTGGGC 6734 Query 63468 -TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 | ||||| || || | ||| || || ||||| || ||||| | || || | || | Sbjct 6735 GTGCCCGCGTTGAACATGGTCGGCGAGGCGTGCGTGAACCACCTCTCTGACATGAGCGTA 6794 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||||||||| || | || || || | | || || || | || || ||||| ||| Sbjct 6795 TACGTCTCAATCGCCGCCTCGATGTCGCTGAGGTGGATGCCAAGCGCCACGCGCATCAAC 6854 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTG 63613 ||||||||||| | || || | |||| Sbjct 6855 ATGTGCTGAGGCCGCTCGACAACCTTG 6881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633604975595200