Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq3345 829 0.0 >seq3345 Length=67807 Score = 829 bits (918), Expect = 0.0 Identities = 785/997 (79%), Gaps = 4/997 (0%) Strand=Plus/Minus Query 166054 TTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTG 166113 ||||||| |||| | || || || | ||| | || || |||||||||| || || Sbjct 46416 TTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTA 46357 Query 166114 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTT-CATCGTCGCTTTCGTAGCGGCACC 166172 ||| | || ||||| | |||| | || | || | | | ||||| | || ||||| Sbjct 46356 ATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTATCGCAGCACC 46298 Query 166173 TCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAA 166232 ||| || ||||||||||| ||||||||||| || || || |||||| | || || ||||| Sbjct 46297 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAACAA 46238 Query 166233 CATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCAT 166292 |||||||||||||||||| || || || ||||| || ||| |||||||||| || || Sbjct 46237 CATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCAAT 46178 Query 166293 CTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGT 166352 ||||||||| || ||| | ||||| ||||| || ||||||||| ||| ||| || || || Sbjct 46177 CTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTTGT 46118 Query 166353 CTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCG 166412 ||||||||| |||| || | | ||| ||||| |||||||| ||||| | |||||||| Sbjct 46117 TTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTACCG 46058 Query 166413 CCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 166472 || ||||||||||| ||||| || || || | ||| || || || || |||||||| || Sbjct 46057 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGC 45998 Query 166473 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTAT 166532 ||| ||| | |||| || ||||||||||||||||||| || | ||||| || ||||| Sbjct 45997 AGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGTAT 45938 Query 166533 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCC 166592 | ||| || ||||||| ||||||||| |||||||| |||||||||||||| |||||||| Sbjct 45937 CTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 45878 Query 166593 CTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGG 166652 ||||| ||||| ||||| || |||||||||||||| || || ||||| || |||||||| Sbjct 45877 ATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCACGG 45818 Query 166653 CAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGG 166712 ||| || ||||| || || ||||||| || ||||| | || ||| ||||| || Sbjct 45817 TTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTACGG 45758 Query 166713 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGG 166772 ||||||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| || Sbjct 45757 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTAGG 45698 Query 166773 TCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGC 166832 ||| || |||||||||||||||| ||||||||||| || | || |||||| |||| | Sbjct 45697 TCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTCGTCCTAGG 45638 Query 166833 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGC-ACCATGGCATTCA 166891 || ||||| || || ||||||||||| || || | ||||| ||| || |||||||||| Sbjct 45637 TGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGT-AGCTACTATGGCATTCA 45579 Query 166892 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 166951 |||| ||||||||||||||||||||||| | | ||| || |||||||| |||||| Sbjct 45578 ACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 45519 Query 166952 CTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATG 167011 ||||||| || | || |||||| | || ||||||||||| |||||||||||||| | Sbjct 45518 CTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAACG 45459 Query 167012 CTCACAACTTCCCTCTGGATCTTGCTGCTGCTGAGTC 167048 |||||||||||||||| ||||| ||||||| |||||| Sbjct 45458 CTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 612 bits (678), Expect = 2e-170 Identities = 742/1004 (74%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 167312 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 167371 ||||||||||| || || ||||| || || || || || ||||||||| | ||||| || Sbjct 59805 GATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGACTTCTTCTATTC 59864 Query 167372 CCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGG 167431 || ||| | || || | ||||| ||||| ||||| | || || || || ||| Sbjct 59865 CCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTCGTAACATCTTGG 59924 Query 167432 TATACCCACGGGTTGGC--GTCTAGTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 167489 || || ||||| | || || | ||| ||| || || ||| || || || || || | Sbjct 59925 TACACTCACGGTCTAGCAAGT-TCGTT-CCTAGAAGGATGTAACTTCCTAACTGCTGCTG 59982 Query 167490 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 167549 | || ||||||||| || ||||||||| || || || || | ||||| ||||| | | Sbjct 59983 TATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGACCTGAAGCAC 60042 Query 167550 AGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 167609 | || || ||| | |||| ||| |||| || || ||||||||| | || || |||| Sbjct 60043 AAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATTGCACTACACG 60102 Query 167610 GAGCCTTTGCTCTCATAGGATTTATG-CTTCGGCAATTTGAGATAAGTAGACTAGTAGGT 167668 | | |||| | | || || ||| || ||| | || |||||||| | | |||||||| Sbjct 60103 GTTCGTTTGGTGTAATTGG-TTTCTGTCTTAGACAGTTTGAGATCGCTCGTTTAGTAGGT 60161 Query 167669 ATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTT 167728 || ||||||||||| || || ||||| |||||||| || || || || || | ||||| Sbjct 60162 ATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTTACAGTTTTC 60221 Query 167729 CTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCG 167788 || | || ||| | || || | ||||||||||||||||| |||||||| || || Sbjct 60222 CTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGTGTAGCGGCA 60281 Query 167789 ATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCAT 167848 || || | ||||| || |||||||| |||||||| |||||||| || ||||| ||||| Sbjct 60282 ATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAACCCATTCCAC 60341 Query 167849 ATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACA 167908 |||||||| || ||||||||||| || ||||| || || | ||| || ||||||| || Sbjct 60342 ATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCATGGTGCGACT 60401 Query 167909 GTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACG 167968 |||||||| ||||| | ||||||||||| || ||||||||| ||||| | | Sbjct 60402 GTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCATTCACTCCA 60461 Query 167969 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTT 168028 || || ||| || ||||| || ||||| ||||| ||||| ||||||||||| |||||| Sbjct 60462 ACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATTTTT 60521 Query 168029 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATG 168088 ||| |||| ||| || ||||||||||| |||||||| ||||||||||| || || Sbjct 60522 GGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTACCAGTAGCT 60581 Query 168089 GGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGAC 168148 || | ||||||||| | || ||||| | ||| | ||||| || || ||||| || || Sbjct 60582 GGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGTGCATACGAT 60641 Query 168149 TTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAA 168208 || || || || || ||||||| ||||| || || || || ||||| ||||| |||||| Sbjct 60642 TTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTCTACACGAAA 60701 Query 168209 AACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAA 168268 |||| ||| || |||||||| ||||||| ||||||||| || ||| ||||| |||||| Sbjct 60702 AACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAACCTCATGAA 60761 Query 168269 AACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 ||||| | ||||| || || ||| | ||| | || ||||| || Sbjct 60762 AACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCT 60805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567207807555200