Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1787 100 2e-16 seq2411 96.9 3e-15 seq2994 91.5 1e-13 seq2338 91.5 1e-13 seq1754 91.5 1e-13 seq1956 86.0 5e-12 seq1041 82.4 6e-11 >seq1787 Length=9008 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || ||| |||| || || || || | | Sbjct 762 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCG 821 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | | | |||| || || || ||||||||||| || || ||||| || Sbjct 822 GACTCGATCGGCAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 881 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | ||||| ||||||| |||| ||||||||| Sbjct 882 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAC 941 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 942 ATCCAGAAGGAGTCGACC 959 >seq2411 Length=24813 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 || || ||| |||| ||||| ||||| | | || || | ||| || |||| || Sbjct 4228 GGCAAGACGATCACCCTTGAGGTGGAGCCTTCGGACTCCATCGACAATGTCAAGGCCAAG 4287 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || ||||||||||| || || || ||||| || || || || ||||| ||||| ||| Sbjct 4288 ATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTTGCGGGCAAGCAG 4347 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 | ||||| ||||||| | || || |||||||| || || || || || | || | Sbjct 4348 CTGGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTCCACCTC 4407 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 ||| |||| | ||||| ||| Sbjct 4408 GTTCTGCGCCTCCGCGGTGGT 4428 >seq2994 Length=21391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| || || ||||| || || || || || || || ||||| Sbjct 16670 AAGATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTCATTTTCGCTGGCAAG 16611 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||||| |||||||||||||||| || || ||||| || Sbjct 16610 CAGCTCGAGGATGGTCGCACGCTCTCCGATTACAACATCCAGAAGGAATCTAC 16558 >seq2338 Length=9794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || ||| |||| || || || || || | Sbjct 8339 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGACGGCG 8280 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | | | |||| || || || ||||||||||| || || ||||| || Sbjct 8279 GACTCGATCGGCAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 8220 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||| ||| | ||||| ||||||| |||| |||||||| Sbjct 8219 CAGCGCCTGATCTTTGCCGGCCTCCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAT 8160 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 8159 ATCCAGAAGGAGTCGACC 8142 >seq1754 Length=9193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || ||| |||| || || || || | | Sbjct 5993 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCT 6052 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || ||||||||||| || || ||||| || Sbjct 6053 GACTCGATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 6112 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | | ||| ||||||| |||| ||||||||| Sbjct 6113 CAGCGCCTGATCTTCGCGGGCAAGCAGCTCGCGGACGGCCGCACCCTCTCGGATTACAAC 6172 Query 22399 ATTCAAAA 22406 || || || Sbjct 6173 ATCCAGAA 6180 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 ||||||| ||||| || || | | ||| || ||| |||| || || || || | | | Sbjct 6222 TGCAAATCTTTGTCAAGACGCTCAGCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCTG 6281 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | | ||| | | || ||||| || ||||||||||| || || ||||| || | Sbjct 6282 CCTCGATCGACAACGTAAAGGCCAAAATCCAGGACAAGGAGGGCATCCCGCCCGACCAGC 6341 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 |||| || || || || ||||| ||| | | ||| ||||||| |||| |||||||||| Sbjct 6342 AACGCCTGATCTTCGCGGGCAAGCAGCTCGCGGACGGCCGCACCCTCTCGGATTACAACA 6401 Query 22400 TTCAAAA 22406 | || || Sbjct 6402 TCCAGAA 6408 >seq1956 Length=13199 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| || | || || || | ||||| || ||| |||| ||||| ||||| | | | Sbjct 2742 TGCAGATCATCGTCAAGACGCTCACCGGAAAGACGCTCACGCTTGAGGTGGACGCGTCGG 2683 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | | | ||| | |||| || ||||| ||||||||||| || || ||||| || | Sbjct 2682 ACTCGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGC 2623 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || || || || ||||| ||| | ||||| ||||||| |||| || ||||| | Sbjct 2622 AGATCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACTACAATA 2563 Query 22400 TTCAAAAAGAATCCACC 22416 |||| || || || ||| Sbjct 2562 TTCAGAAGGATTCGACC 2546 >seq1041 Length=17511 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || || || | | Sbjct 5020 ATGCAGATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTGGAGGTCGAGCCGTCT 5079 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| || || || ||||||||||| || || ||||| || Sbjct 5080 GACTCGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 5139 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| |||||| |||| || |||||| Sbjct 5140 CAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACCCTCTCGGACTACAAC 5199 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 5200 ATCCAGAAGGAGTCGACC 5217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419710546135780