Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1011 109 1e-18 seq196 104 5e-17 seq2836 100 6e-16 seq3275 95.1 2e-14 >seq1011 Length=10758 Score = 109 bits (120), Expect = 1e-18 Identities = 326/486 (67%), Gaps = 18/486 (4%) Strand=Plus/Minus Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CG 251720 ||||| || || ||||| | ||||| ||||||| | |||||| || |||| || Sbjct 4956 CGGTCGGCTACGAACTCAATGTACTGCCCCATCAAGCGCGCGTTCATCCCGATCAGGTCG 4897 Query 251721 ACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGC 251780 || || | || || |||||||| | ||| || | ||||| ||| || || || Sbjct 4896 ACG-GGTAGCGCGTCGCAGATGAAGTTGCGCTCGATGTCGACTGCTTCCCGGACGATCGC 4838 Query 251781 CTTCACCTGTGCCA-GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAAC 251838 | |||| ||| | | | |||| | ||| ||| | ||||| ||||| | ||| ||| Sbjct 4837 GTGCACC-GTGTCTTGCGGCAGCGGATGCTCGAGCATGGAGTAGAGGAGGCACGC-AAAG 4780 Query 251839 TGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATC 251898 | |||||||||||||||||| ||||| |||||| || | || || ||||| Sbjct 4779 TCGCAGTGCAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAACGTGAGCCCCGGCATG 4720 Query 251899 ACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCG 251958 | || || ||| |||||||||||| ||||| || || ||| ||| | | |||||| Sbjct 4719 AGGCCGCGCTTCTTGAGCCAGAAGAGCGCGCAGAACGAGCCACTGAAGAAGATGCCCTCG 4660 Query 251959 ACACACACCCATGCAACAAGGCGCTCAGCAAACGACTTG-TCCTGCGACAAGAACTTCTG 252017 || || | | | || ||||||| ||||| ||| | || ||| | | || | Sbjct 4659 ACGCATGCAAACCCCACGAGGCGCTGCGCAAAGGACGCGTTCGAGCG-GATCCATTTGAG 4601 Query 252018 TGCCCATGCTGCCTT--CTTTCCAACCGCGGGGA--TTGTTTCGATTGCATCAAAGAGAG 252073 ||||| || ||||| | | | |||||||| | | ||| ||| || | ||||| Sbjct 4600 CGCCCAGGCCGCCTTGGCCTGC--ACCGCGGGCACCTCGTT--GATCGCCTGGAAGAGCC 4545 Query 252074 AGTTCCGCTCGGCATCGTC-CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAA 252132 | ||||||||||||||| ||| | | || || | || || |||| ||||||| Sbjct 4544 TCTGCCGCTCGGCATCGTCGCTC-ACGTACGTGTCGATGAGCAGGCTGTACGTCTCCGAG 4486 Query 252133 TGGATG 252138 |||||| Sbjct 4485 TGGATG 4480 >seq196 Length=16868 Score = 104 bits (114), Expect = 5e-17 Identities = 136/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 280175 CATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA 280234 ||| || |||| |||||||| ||||| || | ||||| | || || |||||| | Sbjct 6094 CATCGGCGCCAACGGTGCGGGCAAGTCCACGATGATCAAGCTGCTCACGGGCGAGCTGGA 6035 Query 280235 GGCCACTGAGGGGTCCG------TTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 | || |||| |||| | |||||||| || ||| ||| | || ||||| || Sbjct 6034 GCCCGACAAGGGCTCCGGCGAGGTGTGGAAGCACCCGAACGCGCGCGTCGCCTACGTGGC 5975 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| ||||||||||||||| ||||||| ||| | || || ||| | ||||| | Sbjct 5974 GCAGCACGCGTTCCACCACATCGAGCACCACCTCGACCTCACCCCCAACGAGTACATCCG 5915 Query 280349 GTGGCGCTA 280357 |||||||| Sbjct 5914 CTGGCGCTA 5906 >seq2836 Length=15749 Score = 100 bits (110), Expect = 6e-16 Identities = 344/530 (65%), Gaps = 21/530 (4%) Strand=Plus/Plus Query 293896 CACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCC 293955 ||||| || ||| ||| |||||||||||||| ||||| | || ||||| || Sbjct 8654 CACACGGCGACCTCGTCCGGCGAGGTGTACTCGATGATCTCGGTGCACAGGTTGGAGCAG 8713 Query 293956 TTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACA 294015 ||| ||||| || ||| || |||| ||| | ||| |||| |||| Sbjct 8714 CGGATCGTGCCAAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGGATG 8773 Query 294016 TATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGACAT----CGCGAGC 294071 || ||| | ||||| || ||||| | | || |||||| ||| | | |||| || Sbjct 8774 TACGGCGTGCCCGTCTCGATCTGCGAGTCGAGGATGGTGAACCACAGCTGCTGCGCGGGC 8833 Query 294072 CTTCACCACGCGCTTT---GCCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTA 294128 |||| |||| ||||| ||||| ||| |||| |||||| || | || | Sbjct 8834 -------ACGCTCTTTCGCGCCTTGCCCTCTTTCTCGTACTGGGTGTACAGAGCCTCAAA 8886 Query 294129 TTCCTTGCCATATACATCAGAC-AGGCCAGGGCACTCGTGAGGGTCAAGTAGAGACCACT 294187 ||| ||| | || ||| || |||||||||||||| ||| | || ||||| | Sbjct 8887 GGCCTCGCCCCAGCTGTC-GACGAGACCAGGGCACTCGTGCGGGCACATGAGCGACCAGT 8945 Query 294188 GGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGT 294247 | | | | ||| |||||||||||||| || ||| ||||| | ||||| || | || Sbjct 8946 CGCCGTTGGCCTCGACGCGCTTCATGAAGAGGTCAGGCACCCAGAGAGCGTAGAAGAGGT 9005 Query 294248 TGCGGGCGCGCAGGCT-CTCCTCACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATG 294306 ||| |||||| | || ||||| || ||||| ||| || ||||| | | Sbjct 9006 CGCGCGCGCGC-GCCTCCTCCTTGCCGTGATTCTTCTTCAGGTCAAGAAAGTCGCACACG 9064 Query 294307 TCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCCCTT---CCTGCGTCCCCCCTGG 294363 || | ||| || || || ||||| || |||| ||||| | ||| || |||||| Sbjct 9065 TCCGCATGCCATGGCTCGAGGTACACGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGG 9124 Query 294364 TTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGCC 294413 | | ||||| | ||| |||| |||| |||||| || |||| ||| Sbjct 9125 TCGACGTAGCGCGCAGTGTTGTCGTACACGCGCAGCATGGGAACGAGGCC 9174 >seq3275 Length=32583 Score = 95.1 bits (104), Expect = 2e-14 Identities = 183/267 (69%), Gaps = 5/267 (2%) Strand=Plus/Minus Query 294151 AGGCCAGGGCACTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCTTC 294210 ||||| |||||||||| |||| | || ||||||| | | | | ||| ||||||||| Sbjct 6599 AGGCCGGGGCACTCGTCAGGGCAGAAGAGCGACCACTCGCCGTTGGCCTCGACGCGCTTC 6540 Query 294211 ATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTC-TCCTC 294269 ||||| || || ||||| | ||||| || | || ||| |||||| | ||| |||| Sbjct 6539 ATGAAGAGGTCGGGCACCCAGAGCGCGTAGAAGAGGTCGCGCGCGCGC-GCCTCTTCCTT 6481 Query 294270 ACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGATA 294329 || || || || || |||||||| | || ||| | ||| || || || || Sbjct 6480 GCCGTGGTTCTTGCGCAGCTCGAGGAAGTCGAAGACGTCCGCATGCCATGGCTCGAGGTA 6421 Query 294330 CACAGCAAAGGACCCCTT---CCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTC 294386 |||||| |||| ||||| | ||| || ||||||| | ||||| | |||| ||| Sbjct 6420 CACAGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCGGTGGCGTC 6361 Query 294387 AAACACCTTCAGCATAGGCACGATGCC 294413 || || ||||| || |||| ||| Sbjct 6360 GAAGACGCGGAGCATGGGGACGAGGCC 6334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027791866829492