Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2705 96.9 3e-15 seq2411 82.4 6e-11 >seq2705 Length=11910 Score = 96.9 bits (106), Expect = 3e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| |||||||||||||||||| | ||||||||||| || |||| ||| || ||| Sbjct 7525 CCTCCTCGCAGCCGCAGCACCAGATGGATCGTGCTCTCCTGCTCGATGTCGTAGTC-GCC 7467 Query 33961 AATTGTC-GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| ||| | |||||| | ||||||||| | || || || ||||||| | ||| Sbjct 7466 AATGGTCTTCCGGTCGTCAAGCTGCTTGCCGCCGAAGATGAGCCGCTGCTCCTTGGGCGG 7407 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051 | || ||| |||||| ||| || ||||| Sbjct 7406 GATGCCCTCCTTGTCCTGAATCTTGGCCTTAA 7375 >seq2411 Length=24813 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || ||||| || || || ||||| ||||||||| |||||||| || | || || || Sbjct 4418 AGGCGCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCG 4360 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| |||| |||||||| ||||| || ||||||||||||||| || | || ||| Sbjct 4359 GCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTC 4300 Query 34029 TTTGTCC 34035 |||||| Sbjct 4299 CTTGTCC 4293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397045888656424