Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1041 131 4e-25 seq1754 122 2e-22 seq1787 111 4e-19 seq2338 109 1e-18 seq1956 104 6e-17 seq262 98.7 2e-15 seq3336 87.8 4e-12 seq2411 86.0 1e-11 >seq1041 Length=17511 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | || ||||| || | || || || ||||| || |||| Sbjct 5022 CATG-CCACCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGT 4964 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| ||||| || | || || || ||||||||||| ||||| || Sbjct 4963 CCGAAAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGG 4904 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || || ||||| || || || || || | Sbjct 4903 GCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCT 4844 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||||||||| || || || ||||||||||| |||||||| Sbjct 4843 CGACCTCGAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 4792 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | || || || ||||| || ||||| | | Sbjct 5246 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 5187 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||||||||||||||| || ||| Sbjct 5186 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGG 5127 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || || || || || || Sbjct 5126 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACC 5067 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| || || || ||||||||||| |||||||| Sbjct 5066 TCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 5020 >seq1754 Length=9193 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || |||| || | || | || ||||| || || || | | Sbjct 6219 CCACCGCGGAGGCGGAGCCCGAGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAG 6160 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| | | || || || ||||||||||| ||||| || ||| Sbjct 6159 AGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 6100 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||||||||| || || ||||| || || || || || || || Sbjct 6099 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACC 6040 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| ||||| || |||||||| || |||||||| Sbjct 6039 TCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 5993 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || || || | ||| ||||| ||||| | | || || || ||||||||| Sbjct 6408 TTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGATC 6349 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || || || || ||||| || || || ||||||||||| || || ||||| || Sbjct 6348 AGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTTACGTTGTCG 6289 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || || | || || || ||||| ||||||||||| ||| | || |||||||| || Sbjct 6288 ATCGAGGCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGCTGAGCGTCTTGACAAAG 6229 Query 288466 ATCTGCA 288472 || |||| Sbjct 6228 ATTTGCA 6222 >seq1787 Length=9008 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | ||| ||||| ||||| || | || || || || ||| Sbjct 952 TCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 893 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || || || |||||||| || || || ||||| Sbjct 892 ATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 833 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || || || || || || ||||| ||||||||||| ||||| || |||||||| Sbjct 832 CCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACA 773 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 772 AAGATCTGCAT 762 >seq2338 Length=9794 Score = 109 bits (120), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || ||||| || | || || || |||||||| || | Sbjct 8109 CATG-CCACCACGAAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAAT 8167 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| ||||| || | || || || |||||||| ||||| || Sbjct 8168 CCGAGAGGGTGCGGCCGTCCTCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGG 8227 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || || ||||| | || || || || | Sbjct 8228 GGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCT 8287 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||||||||| ||||| || |||||||| || |||||||| Sbjct 8288 CGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 8339 >seq1956 Length=13199 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| ||||| | ||| ||||| ||||| || | || || || |||||| Sbjct 2553 TCCTTCTGAATATTGTAGTCTGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 2612 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||| || ||||| || || || ||||| || || || || ||||| Sbjct 2613 ATCAGGATCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 2672 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || || ||||||| |||||| ||||| || ||||||||| Sbjct 2673 TCGATCGAGTCCGACGCGTCCACCTCAAGCGTGAGCGTCTTTCCGGTGAGCGTCTTGACG 2732 Query 288463 AATATCTGCA 288472 | ||||||| Sbjct 2733 ATGATCTGCA 2742 >seq262 Length=5824 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | || | || ||||||| ||||| | | Sbjct 3031 CCACCGCGTAGGCGGAGCACGAGGTGGAGGGTCGACCCCTTCTGGATATGGTAGTCCGAG 3090 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || | || |||||||| | ||||| || ||| Sbjct 3091 AGGGTGCGGCCGTCCTCGAGCTGCCTGCCCGCGAAGATTAAGCGCTGCTGGTCGGGCGGG 3150 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| | || || ||||| | || || || || || || Sbjct 3151 ATGCCCTCCTTGTCCTGGATCCTGGCCTTGACGTTGCCGATCGAGTCAGACGGCTCGACC 3210 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| ||||| || | |||||| || |||||||| Sbjct 3211 TCGAGGGTGATCGTCTTGCCGGTGAGCGCCTTGACAAAGATCTGCAT 3257 >seq3336 Length=58286 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 288250 CCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGC 288309 ||||| | ||| || || ||||||| ||| || || || || || ||||| | ||| Sbjct 18354 CCGCGCACTCTGAGGACCAGATGAAGCGTCGCCTCCTTCTGTATTTTGTAGTCCGAGAGG 18413 Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 |||| ||||| || | | || || ||| ||||||| | ||| | ||||| Sbjct 18414 GTGCAGCCGTCCTCGAGCTCCTTGCCCGCGTAGATCAGGCTCTGCTCGTCGGGCGGGATG 18473 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGA-ATCGCTCGATTCTACTTC 288428 || | | |||||||| || || || ||||| || || || || | | | || || Sbjct 18474 CCCGCCTCGTCCTGGATCTTGGCCTTGACGTTGTCGATCGACATAGAAGGCCTG-ACATC 18532 Query 288429 GAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||||||||| ||||| || |||||||| || |||||||| Sbjct 18533 GAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 18577 >seq2411 Length=24813 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| || | ||| || || ||||| || ||||| | Sbjct 4427 CCACCGCGGAGGCGCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 4368 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || || ||||| || ||||| ||| ||| Sbjct 4367 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGGG 4308 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || || || || || || || | || || Sbjct 4307 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGAGTCCGAAGGCTCCACC 4248 Query 288427 TCGAGCGTGATCGTCTTCCC 288446 || || ||||||||||| || Sbjct 4247 TCAAGGGTGATCGTCTTGCC 4228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179602829933336