Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2994 107 2e-18 seq1787 100 3e-16 seq1041 93.3 4e-14 seq2411 84.2 2e-11 seq1754 84.2 2e-11 seq2338 82.4 8e-11 >seq2994 Length=21391 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||||| ||||| | ||| ||||| || || ||||||||||| | Sbjct 16527 ACCGCCACGGAGGCGGAGCACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGA 16586 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || ||||||||||| || ||||||| |||||||||||||| || Sbjct 16587 GAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGG 16646 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || ||||| || || Sbjct 16647 GATGCCCTCCTTGTCTTGGATCTT 16670 >seq1787 Length=9008 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| || || || ||||||||||| | || |||||| |||| Sbjct 973 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 914 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || || |||||||||||||| || || || || || || Sbjct 913 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 854 Query 64352 TGTATTTT 64359 || || || Sbjct 853 TGGATCTT 846 >seq1041 Length=17511 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| || || || |||||||| || | || ||||||| |||| Sbjct 5231 AGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCC 5172 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || |||||||||||||| || || || || || || Sbjct 5171 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 5112 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCA-CCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | | ||| |||| || || || | || | || Sbjct 5111 TGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGC-TCGACCTCCAGGGTGATCGT 5053 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | || || ||||| || ||||| Sbjct 5052 CTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 5020 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| || || || |||||||| || | | ||||||| |||| Sbjct 5003 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCC 4944 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || |||||||||||||| || || || || || || Sbjct 4943 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 4884 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCA-CCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | | ||| |||| || || || | || | || Sbjct 4883 TGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGC-TCGACCTCGAGGGTGATCGT 4825 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | || || ||||| || ||||| Sbjct 4824 CTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 4792 >seq2411 Length=24813 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || || || | |||||| || || || |||||||| || | Sbjct 4428 ACCACCGCGGAGGCGCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 4369 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || ||||||||||| ||| | ||||| |||||||| || || || Sbjct 4368 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGG 4309 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 4308 GATGCCCTCCTTGTCCTGGATCTT 4285 >seq1754 Length=9193 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| | || || ||||||||||| | || |||||| |||| | ||||||||||| Sbjct 6189 GTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCC 6130 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||||||||| || || || || || || || ||||| ||| Sbjct 6129 GCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTG 6070 Query 64367 ACAACCTCCACTGTATCA-CCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | | ||| |||| || || || | || | ||||||||||| | || Sbjct 6069 ACGTTGTCGATCGAGTCAGACGGC-TCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGT 6011 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 6010 CTTGACAAAGATCTGCAT 5993 >seq2338 Length=9794 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| || || || || |||||||| | || |||||| |||| Sbjct 8128 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCC 8187 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||||| | || || |||||||||||||| || || || || || || Sbjct 8188 TCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 8247 Query 64352 TGTATTTT 64359 || || || Sbjct 8248 TGGATCTT 8255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499623490149280