Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2836 102 7e-17 seq2994 86.0 6e-12 >seq2836 Length=15749 Score = 102 bits (112), Expect = 7e-17 Identities = 557/874 (64%), Gaps = 25/874 (3%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| | ||| || || || |||||||||||||| | | ||| | ||| | | Sbjct 9501 AAGGTGGTCGAGCGGCCGCAGCAGATGCTCATGCGCGTGTCGTTGGGCATCCACCAGCAC 9442 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||| | || |||| || || ||| | ||||| | | |||||||||||| Sbjct 9441 GACCTGGATGCGGCGATTGAGACGTACCACCTGATGAGCGAGCGCTGGTTCACGCACGCG 9382 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | ||||| ||||| ||| |||||| | ||| ||| |||| ||||| || ||||| Sbjct 9381 ACGCCCACGATGTTCAACGCGGGCACGCCGCAGCCGCAGATGTCCTCGTGCTTCCTGCTC 9322 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGAT---TGCGCGTTG 123134 | || || ||| ||| || |||| || || || | | |||||| | Sbjct 9321 TCGATGAAGGAGGACTCGATCGAGGGCATCTTCGAGAC---GCTCAAACTGTGCGCGCAG 9265 Query 123135 ATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC 123194 || ||||| | || ||||| |||||| ||| | || | | | || || || Sbjct 9264 ATATCCAAGAGCGCGGGTGGCATCGGCGTGGCGGTGACCAACATCCGCG-CCAAGG--GC 9208 Query 123195 -CG--CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTAC 123251 || ||||| |||| | ||| | | ||| |||| |||||||||| || ||| Sbjct 9207 TCGTACATCAAGGGCACGGGCGGCACGAGCAACGGCCTCGTTCCCATGCTGCGCGTGTAC 9148 Query 123252 AATAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATC 123308 | ||| | | ||| ||||||||||||| |||||| ||||| ||||| | || | Sbjct 9147 GACAACACTGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCGTG 9088 Query 123309 TATCTAGAACCGTGGCACGTTGATGTGTACGA-TTTTTTAAATTTAAAACGCAACATGGG 123367 || || || || ||||| | || |||| ||| ||| || | | || | | | || || Sbjct 9087 TACCTCGAGCCATGGCATGCGGACGTGTGCGACTTTCTTGACCTGAAGAAGAATCA-CGG 9029 Query 123368 GGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTAT 123427 ||| || | || ||||| | || |||||| | ||||| || || | || || Sbjct 9028 CAAGGAGGAGGCGCGCGCGCGCGACCTCTTCTACGCTCTCTGGGTGCCTGACCTCTTCAT 8969 Query 123428 GCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCT 123486 | ||||| | | | |||||| |||||||||||||| |||| || ||| || || Sbjct 8968 GAAGCGCGTCGAGGCCAACGGCGACTGGTCGCTCATGTG-CCCGCACGAGTGCCCTGGTC 8910 Query 123487 TGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA 123546 | |||| | ||| | ||||| | ||||| | || |||||| || |||| Sbjct 8909 TCGTCGACAGCTGGGGCGAGGCCTTTGAGGCTCTGTACACCCAGTACGAGAAAGAGGGCA 8850 Query 123547 A-ACAGGTTAGTCAGGTTCCG-GCACGTGAT-TTGTTCAAATTTATTATCGAAACACAAG 123603 | | | || | ||| ||| | | | ||||| || |||| | || Sbjct 8849 AGGCGCGAAAGAGCGTGCCCGCGCAGCAGCTGTGGTTCA---CCATCCTCGACTCGCAGA 8793 Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGA 123663 |||| || || ||||||||||| || ||||| |||||| |||| | || |||| ||| Sbjct 8792 TCGAGACGGGCACGCCGTACATCCTGTACAAGGACGCCGCCAACCGCAAGTCCAACCAGC 8733 Query 123664 GCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATG 123723 ||| | || || || || || || ||| |||| || ||||| |||| | Sbjct 8732 AGAACCTTGGCACGATCCGCTGCTCCAACCTGTGCACCGAGATCATCGAGTACACCTCGC 8673 Query 123724 CCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | || | || |||||||| || | || ||||| Sbjct 8672 CGGACGAGGTCGCCGTGTGCAACCTCGCCTCGAT 8639 >seq2994 Length=21391 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| ||||||||||| |||||||| ||||| || |||||| | Sbjct 16528 CCGCCACGGAGGCGGAGCACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGAG 16587 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | || || || ||| | || | || |||||||| ||||| Sbjct 16588 AGCGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGG 16647 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || ||||| || || |||| || | || | | |||| || | |||||| Sbjct 16648 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGCTGTCCGAGGGCTCGAC 16706 Query 45293 TTCGAGAGT 45301 ||||| || Sbjct 16707 CTCGAGGGT 16715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451983922063520