Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq3345 919 0.0 seq2756 82.4 9e-11 >seq3345 Length=67807 Score = 919 bits (1018), Expect = 0.0 Identities = 833/1042 (80%), Gaps = 10/1042 (1%) Strand=Plus/Plus Query 7494 CAACAGCAGGTGCTTTGAGAGCAACAGG-AGTGTTCTCAGCAGCAGCAAGGTCAAGAGGG 7552 ||||||| || || |||||||| || || | |||| ||||||| || || |||||| Sbjct 45390 CAACAGCTGGAGCAACTAGAGCAACTGGTAGAGA-CTCACCAGCAGCTAGATCTAGAGGG 45448 Query 7553 AAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGCACG 7612 ||||||||||| |||||||||||||| |||||||| || || | |||||| || | | Sbjct 45449 AAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATACCTAGGTTTGAACGGTTAAGAATG 45508 Query 7613 TCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAA 7672 || ||||| ||||| | ||||||||||| ||| | | |||||||||||||||||| Sbjct 45509 TCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGACTGGTTGAAGTTGAAA 45568 Query 7673 CCGTTGAGGTTGAATGCCATGGT-GCTAACACCAAGAGCAGTGAACCAGATGCCAACAAC 7731 ||||| |||||||||||||| || ||| ||||| | || || |||||||| ||||| || Sbjct 45569 CCGTTTAGGTTGAATGCCATAGTAGCT-ACACCCATAGATGTTAACCAGATACCAACTAC 45627 Query 7732 TGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAA 7791 |||||| || | |||| |||||| || | ||| ||||||||||| |||||||||||||| Sbjct 45628 TGGCCAAGCACCTAGGACGAAGTGAAGTGCACGTGAGTTGTTGAATGAAGCGTATTGGAA 45687 Query 7792 GATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACC 7851 || |||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct 45688 GAATAGACGACCTAAGTAACCGTGAGCTGCAACGATGTTGTAAGTCTCTTCTTCTTGACC 45747 Query 7852 GAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGT 7911 |||||| ||||| ||||| || || |||||| |||||||| | ||||| || || Sbjct 45748 GAACTTGTAACCGTAGTTAGCAGATTCGTTCTCAGTAGTTTCACGGATTAGAGATGAAGT 45807 Query 7912 TACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAG 7971 ||| || ||||| ||||| || ||| ||||||||||| || |||||||| || || || Sbjct 45808 TACTAGAGAACCGTGCATAGCTGAGAATAGAGAACCACCGAATACACCAGCAACACCAAG 45867 Query 7972 CATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAA 8031 ||||||||| |||||||| |||||||||||||| |||||||| ||||||||| ||||||| Sbjct 45868 CATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAAGCATGAAGTTGAA 45927 Query 8032 CGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGAC 8091 ||||||||||| || ||||||||| | || ||||||||||||||||||| || |||| Sbjct 45928 AGTACCAGAGATACCTAGAGGCATACCATCTGAGAAAGAACCTTGACCGATTGGGTAGAT 45987 Query 8092 GAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACG 8151 | |||||| |||||||||||||| |||||||| ||| | || ||||||||||| ||||| Sbjct 45988 TACGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCAACACAGATCCATGGACG 46047 Query 8152 CATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAG 8211 ||||||||||||||||||||| |||||||||||||| ||||| ||| | | ||| || | Sbjct 46048 CATACCTAGACGGTAAGAAAGCTCCCACTCACGACCGATGTAAGCACATACACCAATGAA 46107 Query 8212 GAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGC 8271 ||||||||| | ||| |||||| ||| |||||||||||| ||||||||||| | ||||| Sbjct 46108 GAAGTGGAAAACAACTAGTTGGTAAGTACCACCGTTGTATAGCCACTCATCGATTGAAGC 46167 Query 8272 TGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACC 8331 ||||||||||| || |||||||| | ||| |||||||| ||| ||||| |||||||| Sbjct 46168 AGCTTCCCAGATTGGGTAGAAGTGAACACCGATAGCGTTTGAACTTGGAACTACAGCACC 46227 Query 8332 AGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAAT 8391 ||||||||||||||| || || | || |||||||| || || |||||||| || || || Sbjct 46228 AGAGATGATGTTGTTTCCGTAAAGTAGAGAACCAGCAACTGGCTCACGGATACCATCGAT 46287 Query 8392 GTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAA---CAAATAGCAGCAGCGAGCAG 8448 || || ||||| || |||| ||||| | | | || ||||||| | | || || Sbjct 46288 ATCTACTGGAGGTGCTGCGATAAAAGCAATAACGTAAGCTGAAATAGCTGTA---AGTAG 46344 Query 8449 CGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTAC 8508 ||||| | ||| || |||||||||||| | || || | || | || || || | Sbjct 46345 AGTAGGGAACATTAGACAACCGAACCAACCAATGTATAGTCTGTTCTCAGTTGAAGTGAT 46404 Query 8509 CCAGTTACAGAATTGTTCCCAG 8530 ||| |||||||| |||||| Sbjct 46405 CCATGCGCAGAATTGCTCCCAG 46426 Score = 664 bits (736), Expect = 0.0 Identities = 748/1001 (75%), Gaps = 0/1001 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 || ||||| || | ||| | ||| || ||||| || | ||||||||||| |||||||| Sbjct 60805 AGGGCGTTTCCACGTGGTAGTACCTCCTCAGGGAAGATGAAGTTTTCATGAGGTTGATCT 60746 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 || |||||||| ||||| | ||||||||| | ||| |||| || || ||||| || Sbjct 60745 TGTGCAGCCATCCACGCACGGATACCTTCATTTAGAAGGTTGTTTTTCGTGTAGAATGTT 60686 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 ||||| || || || || || ||||| | |||||| ||||| || || || || | ||| Sbjct 60685 TCGAATTCAGGGTCTTCTGCGGCTCTAAGCTCTTGCGAAACGAAATCGTATGCACGCAGG 60626 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || ||||| | ||| | |||||| || | ||||| | ||| || || || || Sbjct 60625 TTTAGTGCTAAACCTACAATACCGATCGCACTTGTCCACATACCAGCTACTGGTACGAAA 60566 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 ||||| ||||| |||| ||||||||| || ||| || | |||||| |||||||||||| Sbjct 60565 AGCATGAAGAAGTGTAACCAACGCTTGTTAGAGAATGCAACACCAAAAATCTGAGACCAG 60506 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 ||||| || || || ||||| || || ||||| ||| |||||| || || || | Sbjct 60505 AAACGGTTTGCAGTAACCATTGAGTAAGTCTCTTCTGATTGTGTTGGAGTGAATGCACGG 60446 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 ||||| || | ||||||||||| || | ||| ||||||||||| ||||| |||||| Sbjct 60445 AAAGTGTTCGCAGCATCACCATCTTCGAAAAGAGTGTTCTCTACAGTCGCACCATGAATA 60386 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 ||||| || || || ||||| | |||||| ||||| |||||||| || || ||||| || Sbjct 60385 GCACATAGTAAGGCACCACCAAGGATACCAGCTACGCCCATCATGTGGAATGGGTTAAGA 60326 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 |||||||||||||| || |||||||| || | ||| ||||| || || || |||||||| Sbjct 60325 GTCCAGTTGTGGAAACCTTGTAGGAAAAGAAGGAAACGGAAAATTGCCGCTACACCAAAA 60266 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 || |||||||||||||| | || || | ||| || | || || || | || || Sbjct 60265 CTTGGTGCAAAGAACCAACTTGCTTGACCTAAAGGGTAAACTAGGAAAACTGTAACGAAT 60206 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGCG 6922 || || || |||||||| || |||||||| ||||| ||||||||||| |||| ||| ||| Sbjct 60205 ACGGCGATTGGACCAGAGAAAGCGATTGCGTTGTAAGGACGAATACCTACTAAACGAGCG 60146 Query 6923 ATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAA 6982 ||||||||||| | ||| |||||| || | |||| | ||||| || || | |||| Sbjct 60145 ATCTCAAACTGTCTAAGACAGAAACCAATTACACCAAACGAACCGTGTAGTGCAATAAAA 60086 Query 6983 GGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCAT 7042 | ||| || || |||| ||||| ||| || || || || || ||||| || ||||| Sbjct 60085 GCCCAAAGACCACCAATTTGGAACCAACGAGTGATGTCACCTTGTGCTTCAGGTCCCCAG 60026 Query 7043 AGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAA 7102 | ||| ||||| || || || | | || ||||||||| |||||||||||||| ||||| Sbjct 60025 ATAAGTAGTAGTGAGTGACCCATACTGTTAGCAGGAGTAGATACAGCAGCAGTTAGGAAG 59966 Query 7103 TTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTT 7162 |||||||| || || ||||| || | |||||||||||||| || |||||||| Sbjct 59965 TTACATCCTTCTAGGAACGAACTTGCTAGACCGTGAGTGTACCAAGATGTTACGAAAGTA 59906 Query 7163 GTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGAC 7222 | || || |||||||| || | || ||| | ||| ||||| |||||||| || ||| Sbjct 59905 ATACCAGTTAGCCAACCACCTACAGCTAGGAATGCACATGGGAATAGAAGAAGTCCAGAC 59846 Query 7223 CAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATC 7263 || ||||| |||||||| | |||||||| ||||||||||| Sbjct 59845 CATCCAACGAAAACGAAACGGTCACGCTTTAGCCAGTCATC 59805 >seq2756 Length=33385 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/95 (80%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 177339 TACTATTTAACAGGAAATAGGACGAGCGGGACTTGAACCCGCACGATCTTTACAATCAAC 177398 ||||| ||||| || | || || ||||||||||||| ||||| | | |||||| Sbjct 16396 TACTAGATAACACAAAGTGGGGGTAGAGGGACTTGAACCCTCACGACCGATTAGATCAAC 16455 Query 177399 AGATTTTAAGTCTGGTGTGTCTACCAATTCCACCA 177433 |||||||||||||| |||||||||| ||||||||| Sbjct 16456 AGATTTTAAGTCTGTTGTGTCTACC-ATTCCACCA 16489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622098266377280