Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2836 140 5e-28 seq2059 127 3e-24 seq1011 127 3e-24 seq3275 87.8 3e-12 >seq2836 Length=15749 Score = 140 bits (154), Expect = 5e-28 Identities = 462/698 (66%), Gaps = 34/698 (5%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 || ||| || ||||||| || || | | |||| ||| || | | ||| |||||||||| Sbjct 7714 CTGGTCGACGGTGAACTTGATCGCATCCGCGGC-GGCGCGCGTGCGCAGGTAGTACATGC 7772 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| |||||||||| ||| ||||| | |||||| || || || ||| ||||| Sbjct 7773 CCGTCTTGAGGCCCTTCTTCCAGCCGTAGAAGTGCATCGACGAGAGCTTGGCATAGTTGG 7832 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | |||| |||| | ||| | |||||||||||||||||| || ||||| || || ||| Sbjct 7833 GCTCGGTCATGAACACGTTGAACGACTGGCTTTGGTCGATG-AACGCGCCGCGGTCGGCG 7891 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGT---CTTGAACACGTCTCTG 204073 ||||| | ||| | | | | | |||||| ||| | || || || | | Sbjct 7892 GCCATGTCGATGAGTGAGCGCATCTTGAGCTCCCAGCACGTACGGTAGAGCA-GTTTGAG 7950 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTC--CTG-ATCGAGCCGTTGTCGGCCATCAGTCT- 204129 || || | || ||| || || ||| | ||||||||||| || || | ||| Sbjct 7951 GT-CGTCGGGG---ATC-TCGGGGATCCGCTGCACCGAGCCGTTGTGCGCGATGA-TCTG 8004 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 | | || ||| ||| | ||| | ||||| || |||| |||||| |||| Sbjct 8005 GTTGCGGATCGACTCTGTCCAGAGGCCGCGCTCCATCAGGTCGCGCAACAGGTGCTGGTT 8064 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 || | | || || || | || || | || | | |||||||| ||| | || || Sbjct 8065 GACCACCGCGAACTCGCCAGCGAGTACGCGGCGAGAGTACAGGTTGGACGTGTACGGCTC 8124 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 ||| |||||||||||| | ||||| || || || ||||||||||| || || || Sbjct 8125 GAAGCACTCGTTGTTGCCCAGGATCTGCGCCGTCGACGCGGTGGGCATGGGCGCGAGCAG 8184 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCAT 204369 ||| |||||||| | |||| | | | || ||| || | || |||||| || Sbjct 8185 CAGCGAGTTGCGTAGCCCGTGCATCGCAATCTTGGCCTTGAGGGCGGCCCAGTC--CCAG 8242 Query 204370 CGCAC--TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTG 204427 ||| | ||| ||||||||||||||||| |||| | | ||| | || || || | Sbjct 8243 CGCGCCGAGGGCGTCACGCCCCACATGTCGTACTGGAGCACGCCCTTGCTCACGGGCGAG 8302 Query 204428 CCCTTGTACGTCGGATAAGGCTGATCCTCTT---CTGCCAGCTTGCACGAG---GCGGCC 204481 || | |||| || || || |||| | | || |||| |||||| | | | Sbjct 8303 CCTTCATACGACGCGTA---CTTGCCCTCCTTGGCCGCGAGCTCACACGAGCACGTGAGC 8359 Query 204482 ATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 |||||| |||||||||||| |||||||| |||| Sbjct 8360 GCGGCGTG---GTACATGGTCTCGAAGATCTGCGCGTT 8394 >seq2059 Length=13280 Score = 127 bits (140), Expect = 3e-24 Identities = 497/765 (65%), Gaps = 20/765 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || ||||| | ||||||| | || | | || | ||| ||||||||||| Sbjct 5099 CTGGTCGACGGTGAATTTGATGGCGTCGGCCGCTGCCTTGGAACGCAGGTAGTACATGCC 5158 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| |||||||||| ||| ||||| | ||||| || || || |||| ||| || Sbjct 5159 CGTCTTGAGGCCCTTCTTCCATCCGTAGAAATGCATCGACGAGAGCTTGCCGTAGTTCGG 5218 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||| || | | ||| | |||||| ||||||||||| |||||| || || |||| Sbjct 5219 GTCCTGCACGAATACGTTGAAGCTCTGGCTCTGGTCGATGAA-GGCGCCGCGGTCGGCGG 5277 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTG 204076 |||||| ||| | | |||| || |||||| || | | | | ||| || Sbjct 5278 CCATATCGATGAGCGAGCGCTGCTTGATTTCCCACGATGTGCGGTAGAGCATCT-TGACA 5336 Query 204077 TGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC-C 204134 | || | || | | ||| | ||| ||||||| || || | ||| | | Sbjct 5337 TCGGCCGGGATCTCGGGGATC-TGCTGCACCGAACCGTTGTGCGCGATGA-TCTGGTTGC 5394 Query 204135 TCGTCTCCTCCCCCCACATG-CCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 ||||| | ||||| | ||| | | ||||| ||| | |||||| |||| | | Sbjct 5395 GAATCTCCGGCGTCCACAAGTCCCGATCC-ATCAGATCCTTGAGCAGGTGCTGGTTAACG 5453 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | | || || ||||||| ||| | || | | | |||||| ||| |||| ||||| Sbjct 5454 ACCGTGAACTCGCCGGACAACACGCGGCGCGAGTAAAGGTTGGACGTGTATGGCTCGAAG 5513 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 |||||||||||| | ||||| || || || ||||||||||| || | |||||| Sbjct 5514 CACTCGTTGTTGCCCAGGATCTGCGCTGTCGACGCGGTGGGCATGGGCGCGACGAGCAGC 5573 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCA 204373 |||||||| | |||| | | || ||| || | || |||||| || ||| Sbjct 5574 GAGTTGCGTAGCCCGTGCACCGCAATCTTGGCCTTGAGGGCGGCCCAGTC--CCAGCGCG 5631 Query 204374 C--TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | ||| ||||||||||||||||| |||| | | ||| | || || || ||| | Sbjct 5632 CCGAGGGCGTCACGCCCCACATGTCGTACTGGAGCACGCCCTTGCTCACGGGTGAGCCTT 5691 Query 204432 TGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGAT 204491 ||||| | ||| || ||| | || || | |||||| || | | ||| | Sbjct 5692 CGTACGACTCATACGGGCCATCGATGGCGGCGAGGTCGCACGACGCCGAGACGGCCGCGT 5751 Query 204492 AGTACATGGTCTCAAAGATCTGAACGTTTA---ATCTGGCGGCCTCCGTTCCGTCAAACG 204548 |||| |||||||| || |||| ||| | | || ||||| | ||| |||| Sbjct 5752 AGTAGATGGTCTCGAAAATCTCGGTGTTGAGCGCCCGTGCAGCCTC---GCAGTCGAACG 5808 Query 204549 CCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGA 204593 ||| |||| | ||||||||| || | |||||||| |||| Sbjct 5809 GCAGCTTGAGCAGGATAAACACGTCGGCGAGACCCTGCACGCCGA 5853 >seq1011 Length=10758 Score = 127 bits (140), Expect = 3e-24 Identities = 136/177 (77%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||||||||||||||||||||| |||||||| || ||||||| |||||| || | Sbjct 4794 AGGAGGCACGCAAAGTCGCAGTGCAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAAC 4735 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCT 160035 |||| |||||||||| || ||| |||||||| || | | |||| || | || || Sbjct 4734 GTGAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-GCGCGCAGAACGAGCCACT 4676 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTT 160092 || ||||| ||||| ||| |||||| ||||||| | || |||| || ||||| Sbjct 4675 GAAGAAGATGCCCTCGACGCATGCAAACCCCACGAGGCGCTGCGCAAAGGACGCGTT 4619 >seq3275 Length=32583 Score = 87.8 bits (96), Expect = 3e-12 Identities = 180/266 (68%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 204167 AGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTG 204226 ||||| ||| |||||| ||||||| | || || || | ||| | || | | Sbjct 7541 AGCTCGCGCTGCAGGTGCGGGTTGAGCACAAAGAACTCGCCCGCGAGCGTGCGCCGCGCG 7482 Query 204227 AACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTG 204286 |||||||| ||| | || ||||| |||||||||||| | ||||| || || Sbjct 7481 TACAGGTTGGACGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGCCGTCGAC 7422 Query 204287 GCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGC 204346 || ||||||||||| || || ||||| |||||||||| |||| | | | || | Sbjct 7421 GCGGTGGGCATGGGCGCGAGCAGCAGCGAGTTGCGCAGCCCGTGCGTCGCAATCTTGGCC 7362 Query 204347 TTCAGAGAGGTCCAGTCGTGCATCGCAC--TGGGTTTCACGCCCCACATGTCGAACTGAA 204404 || || | || |||||| || ||| | ||| ||||||||||||||||| |||| | Sbjct 7361 TTGAGGGCGGCCCAGTC--CCAGCGCGCCGAGGGCGTCACGCCCCACATGTCGTACTGGA 7304 Query 204405 AGATGCCTTGACTGACTGGGCTGCCC 204430 | ||| | | | ||||||||| Sbjct 7303 GCACGCCGCGCGAGGCGGGGCTGCCC 7278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795121286630720