Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1041 116 9e-21 seq2411 104 6e-17 seq1787 102 2e-16 seq2338 91.5 3e-13 seq1754 91.5 3e-13 >seq1041 Length=17511 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 5231 AGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCC 5172 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| |||||||||||||| || || || || ||| Sbjct 5171 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 5112 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | | ||| | | || || |||| ||||||||| Sbjct 5111 TGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTC 5052 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 5051 TTGCCAGTGAGCGTCTTGACGAAGATCTG 5023 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| | | || | || || Sbjct 5003 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCC 4944 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || ||||||||||| || || || || ||| Sbjct 4943 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 4884 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| | ||| | | || || || | ||||||||| Sbjct 4883 TGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTC 4824 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 4823 TTGCCAGTGAGCGTCTTGACGAAGATCTG 4795 >seq2411 Length=24813 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| ||||||||||| |||| ||||||||| | | || Sbjct 4421 CGGAGGCGCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 4362 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || |||||||| |||||||| ||||| || || Sbjct 4361 CGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGGGATGCCC 4302 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| || ||| | | || || || | Sbjct 4301 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGAGTCCGAAGGCTCCACCTCAAGG 4242 Query 199589 GTGATCGTCTTACCC 199603 ||||||||||| ||| Sbjct 4241 GTGATCGTCTTGCCC 4227 >seq1787 Length=9008 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| |||||| || | | || | || || Sbjct 973 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 914 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||| || ||||||||||| || || || || ||| Sbjct 913 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 854 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||| | ||| | | || || || | ||||||||| Sbjct 853 TGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTC 794 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 793 TTGCCGGTGAGCGTCTTGACAAAGATCTG 765 >seq2338 Length=9794 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || |||||||| ||||||||||| |||| ||||| || | | || Sbjct 8119 CGAAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTG 8178 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || ||||| ||||| ||||| || ||||||||||| || || || Sbjct 8179 CGGCCGTCCTCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCC 8238 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| ||| | ||| | || || || || | Sbjct 8239 TCCTTGTCCTGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGACCTCGAGG 8298 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || ||||| || || ||||| || || Sbjct 8299 GTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTG 8336 >seq1754 Length=9193 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 |||||||| |||||| |||| |||| |||||| || | | || | || || | ||| Sbjct 6198 AGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGC 6139 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || |||||||| || ||||||||||| || || || || ||||| || Sbjct 6138 TGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATT 6079 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| ||| |||| | ||| | | || || || | ||||||||||| || Sbjct 6078 TTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCG 6019 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || Sbjct 6018 GTGAGCGTCTTGACAAAGATCTG 5996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178870061968604