Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1041 149 7e-31 seq1787 143 3e-29 seq2338 134 2e-26 seq262 134 2e-26 seq1754 131 2e-25 seq1956 122 1e-22 seq2994 116 4e-21 seq2705 98.7 1e-15 seq2411 93.3 5e-14 seq3150 91.5 2e-13 seq600 86.0 7e-12 >seq1041 Length=17511 Score = 149 bits (164), Expect = 7e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| || || |||||| |||| || Sbjct 5001 CACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCCTC 4942 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| ||||| |||| |||||||||||||| ||| | || |||||||||| Sbjct 4941 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 4882 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| ||||| ||| | | | || ||| || || || || | ||||| || | Sbjct 4881 GATCTTGGCCTTGA-CGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCT 4823 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| || || ||||| ||||| Sbjct 4822 TGCCAGTGAGCGTCTTGACGAAGATCTGCAT 4792 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || |||||| |||| |||||||||||||| ||||| Sbjct 5211 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAA 5152 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||||| ||| | || |||||||||| |||||| ||||| ||| Sbjct 5151 GATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 5093 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| || || || |||| ||||| || ||||| || ||||| || | Sbjct 5092 TGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTGA 5033 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 5032 CGAAGATCTGCAT 5020 >seq1787 Length=9008 Score = 143 bits (158), Expect = 3e-29 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || || ||||| |||| ||||||||||||||||| || Sbjct 953 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 894 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 893 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 835 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 ||| | || ||| || || || || | ||||| || ||||| || ||||| || | Sbjct 834 TGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGA 775 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 774 CAAAGATCTGCAT 762 >seq2338 Length=9794 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| || || || ||||| |||| |||||||| |||||| || Sbjct 8148 CTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGGAGGCCGGCAAA 8207 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 8208 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 8266 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 ||| | || ||| || || || || | ||||| || ||||| || ||||| || | Sbjct 8267 TGCCGATCGAGTCCGCCGTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGA 8326 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 8327 CAAAGATCTGCAT 8339 >seq262 Length=5824 Score = 134 bits (148), Expect = 2e-26 Identities = 146/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||||| |||||| || || ||||| |||| ||||||||| |||| ||||| | Sbjct 3068 CCTTCTGGATATGGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCCTGCCCGCGAAGA 3127 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | |||||||||||||||| ||| | || |||||||||| |||| | ||||| ||| | Sbjct 3128 TTAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCCTGGCCTTGA-CGTTG 3186 Query 46524 CC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | || ||| || || || || | ||||| || ||||| || |||| || ||| Sbjct 3187 CCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGCCTTGACA 3246 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 3247 AAGATCTGCAT 3257 >seq1754 Length=9193 Score = 131 bits (144), Expect = 2e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||| || || || ||||| |||| ||||||||||||| ||||| | Sbjct 6182 CCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGA 6123 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||||| ||| | || |||||||||| ||| || ||||| ||| | Sbjct 6122 TCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGA-CGTTG 6064 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| || || || || | ||||| || ||||| || ||||| || ||| Sbjct 6063 TCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACA 6004 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 6003 AAGATCTGCAT 5993 Score = 114 bits (126), Expect = 1e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||| || || || ||||| |||| ||||||||||||| ||||| | Sbjct 6410 CCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGA 6351 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||| |||||||||| ||| | || |||||||||| ||| || ||| | ||| | Sbjct 6350 TCAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTTA-CGTTG 6292 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || | | || || || || | ||||| || ||||| | ||||| || ||| Sbjct 6291 TCGATCGAGGCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGCTGAGCGTCTTGACA 6232 Query 46583 AAGATTTGCA 46592 |||||||||| Sbjct 6231 AAGATTTGCA 6222 >seq1956 Length=13199 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||||||||| || || ||||| |||| |||||||||||||| ||||| Sbjct 2553 TCCTTCTGAATATTGTAGTCTGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 2612 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||||||||||| ||| | || |||||||||| ||||| ||||| ||| Sbjct 2613 ATCAGGATCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTT 2671 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| || ||||| || | ||||| || || || || ||||| || || Sbjct 2672 GTCGATCGAGTCCGACGCGTCCACCTCAAGCGTGAGCGTCTTTCCGGTGAGCGTCTTGAC 2731 Query 46582 AAAGATTTGCA 46592 | ||| |||| Sbjct 2732 GATGATCTGCA 2742 >seq2994 Length=21391 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||||| ||| ||||| ||||| ||||| ||||| || ||||| | || || Sbjct 16545 CACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGACCATCCTC 16604 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| ||||| || | |||||||||||||| ||| | || ||||||||| Sbjct 16605 GAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 16664 Query 46504 GATCTTCTTCTTGA 46517 |||||| ||||| Sbjct 16665 GATCTTGGCCTTGA 16678 >seq2705 Length=11910 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||||| | |||| ||||||||| | || ||||||| | ||| | ||||||| Sbjct 7526 GCCTCCTCGCAGCCGCAGCACCAGATGGATCGTGCTCTCCTGCTCGATGTCGTAGTCGCC 7467 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 | || | |||||| |||||||||||| |||| || | ||||||| | || ||| Sbjct 7466 AATGGTCTTCCGGTCGTCAAGCTGCTTGCCGCCGAAGATGAGCCGCTGCTCCTTGGGCGG 7407 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC-GCCACCGTGTCGCTCGATTCCA 46544 | || |||||||||| ||||| ||| | |||| || | ||| |||| |||| Sbjct 7406 GATGCCCTCCTTGTCCTGAATCTTGGCCTT-AACGTCGGCGATCGTATCGCCTTCCTCCA 7348 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTG 46590 | |||||||| | || || |||| || ||| || | ||||| || Sbjct 7347 CGTCCACCGTCACCGTCTTCCCCGACAACGTCTTGATGAAGATCTG 7302 >seq2411 Length=24813 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| || ||||||||||| || || Sbjct 4392 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAA 4333 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | ||||||||| || | || | || |||||||||| |||||| ||||| Sbjct 4332 GATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 4277 >seq3150 Length=27292 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| || || ||||| |||| || Sbjct 98 CACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTC 39 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 |||||||||||| ||||| |||| |||||| ||||||| Sbjct 38 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCGG 1 >seq600 Length=13348 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| ||| | || |||||| ||||| ||||||||||| || ||| || Sbjct 11075 CGCAGCACCAAATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCAAGCGACCG 11134 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||| ||||||| || || || | |||||| || | || || ||||||| Sbjct 11135 TCCTCCAGCAGCTTGCCCGCAAAGATGAGGCGCTGTGCCTCCGGGGGGGTGCCCTCCTTG 11194 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||||| | | | ||||| || |||| | ||||||| Sbjct 11195 GCCTGGATCTTTGCCTTGACGCCCTCGATGGTGTCAGAGTGCTCGACATTTAGCGTGATG 11254 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||||| || |||||||| ||||| Sbjct 11255 GTCTTTCCATTCAGCGTCTTGACAAAGATCTGCAT 11289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565214292582240