Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1011 194 2e-44 seq1041 140 3e-28 seq2994 132 5e-26 seq1787 123 2e-23 seq1754 118 1e-21 seq600 107 2e-18 seq3336 105 7e-18 seq2411 102 8e-17 seq3150 96.9 3e-15 seq2823 82.4 8e-11 >seq1011 Length=10758 Score = 194 bits (214), Expect = 2e-44 Identities = 385/561 (69%), Gaps = 17/561 (3%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||||| |||| |||||||| | || ||||| ||||| ||| || | Sbjct 4789 GCACGCAAAGTCGCAGTGCAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAACGTGAG 4730 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || |||||||||||||| || |||||||| || | ||| ||| ||| ||||| Sbjct 4729 CCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAGCGCGCAGAACGAGCCACTGAAGAA 4670 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || |||||||||| || || |||| ||||||| | || | || | || | Sbjct 4669 GATGCCCTCGACGCATGCAAACCCCACGAGGCGCTGCGCAAAGGACGCGTTCGAGCGG-- 4612 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCA--TCGTTTCGATGGCG 133131 ||||| |||||||| | ||||| | | || |||| ||||| ||| || Sbjct 4611 -ATCCATTTGAGCGCCCAGGCCGCCTTGGCCTGCACCGCGGGCACCTCGTT--GATCGCC 4555 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAG--GGTCGAAT 133189 | || | | | ||| | | | |||||| ||||||||||| || | | Sbjct 4554 TGGAAGAGCCTCTGCCGCTCGGCATCGTCGCTCACGTACGTGTCGATGAGCAGGCTG--T 4497 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 || | |||||||| | ||||||||| ||||| || |||||||| ||||| ||||||||| Sbjct 4496 ACGTCTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 4437 Query 133250 CCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 || |||||| || | || ||| || ||| | ||||| ||| ||||||||||| Sbjct 4436 GCAGCTGCACGTCG-GCGCAGAAGCGTTCGGCGAGATTCTCGACAACGATGCCGTCCGAC 4378 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCC 133368 || ||||| ||||| ||||||||| ||||||| || |||||| | | | | || | | Sbjct 4377 GCCGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTCGCTCGCCCTTGGTAAGTCGATTC 4318 Query 133369 CAGTCGCGCGTGTCCTTGGAC--AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||||| || |||| || | ||||| | |||| | |||||||| || ||| || Sbjct 4317 CAGTCGTGCAGGTCC--GGCCCAAGGTCAATCTCCGAGGTTGTCCAAAAGGAGGCCACGT 4260 Query 133427 CTTTTTTGTACATACTCCACA 133447 || || ||||| ||||| Sbjct 4259 GCTTCTTATACATTTCCCACA 4239 >seq1041 Length=17511 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| || |||||| |||| |||||| | | Sbjct 4792 ATGCAGATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTCGAGGTCGAGCCGTCT 4851 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || |||| ||||| ||||| || || ||||||| Sbjct 4852 GACTCGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 4910 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||||||| ||||| || |||| ||||||||| |||||||| Sbjct 4911 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACCCTTTCGGACTACAA 4970 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||| ||||| | ||||| || Sbjct 4971 CATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCG 5006 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| || |||||| | || |||||| | | Sbjct 5020 ATGCAGATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTGGAGGTCGAGCCGTCT 5079 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || |||| | || | || |||| ||||| ||||| || || ||||||| Sbjct 5080 GACTCGATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 5138 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||||||| ||||| || |||| |||||||||| |||||||| Sbjct 5139 GCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACCCTCTCGGACTACAA 5198 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||| || || | ||||| || Sbjct 5199 CATCCAGAAGGAGTCGACCCTCCACCTTGTGCTCCG 5234 >seq2994 Length=21391 Score = 132 bits (146), Expect = 5e-26 Identities = 139/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338 |||||| |||| |||||| || | |||||| | | |||| | || | || |||| || Sbjct 16718 ATCACCCTCGAGGTCGAGCCCTCGGACAGCATTGACAACG-TCAAGGCCAAGATCCAAGA 16660 Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||| ||||| || || ||||||| ||||| ||||||| ||| ||||| ||||| || || Sbjct 16659 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTCATTTTCGCTGGCAAGCAGCTCGAGGA 16600 Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | ||||| ||| ||| ||||||||||| |||||| | ||||||||| ||||||| || Sbjct 16599 TGGTCGCACGCTCTCCGATTACAACATCCAGAAGGAATCTACGCTGCATCTGGTGCTCCG 16540 >seq1787 Length=9008 Score = 123 bits (136), Expect = 2e-23 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| || |||||| |||| |||||| | | Sbjct 762 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCG 821 Query 38304 GAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||| | || |||| || | || | || |||| ||||| ||||| || ||| ||||| Sbjct 822 GACTCGATCG-GCAA-CG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 878 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || ||||| ||||| || |||| ||||||||| || ||| Sbjct 879 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTAC 938 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| |||| || || | ||||| || Sbjct 939 AACATCCAGAAGGAGTCGACCCTCCACCTCGTGCTCCG 976 >seq1754 Length=9193 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| || |||||| |||| |||||| | | Sbjct 5993 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCT 6052 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||||| ||||| ||||| || || ||||||| Sbjct 6053 GACTCGATCGACAACG-TCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCGCCCGACCA 6111 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||||||| ||||| | |||| ||||||||| || ||||| Sbjct 6112 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGCGGACGGCCGCACCCTCTCGGATTACAA 6171 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| |||| |||| || || Sbjct 6172 CATCCAGAAGGGGTCGACCCTCCA 6195 Score = 107 bits (118), Expect = 2e-18 Identities = 149/207 (72%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| || || || ||||||| ||||| || |||||| |||| |||||| ||| Sbjct 6222 TGCAAATCTTTGTCAAGACGCTCAGCGGCAAGACGATCACCCTCGAGGTCGAG----CCG 6277 Query 38305 ACAGCGTGCA-----AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | |||| | || | ||||||| ||||| ||||| || || |||| Sbjct 6278 TCTGCCTCGATCGACAACG-TAAAGGCCAAAATCCAGGACAAGGAGGGCATCCCGCCCGA 6336 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || || || | ||||||||| ||||| | |||| ||||||||| || || Sbjct 6337 CCAGCAACGCCTGATCTTCGCGGGCAAGCAGCTCGCGGACGGCCGCACCCTCTCGGATTA 6396 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||||| |||| |||| || || Sbjct 6397 CAACATCCAGAAGGGGTCGACCCTCCA 6423 >seq600 Length=13348 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| | || || |||||||| | | |||||| | | Sbjct 11289 ATGCAGATCTTTGTCAAGACGCTGAATGGAAAGACCATCACGCTAAATGTCGAGCACTCT 11230 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | || | ||| ||| |||| | ||| ||||| | ||| | || Sbjct 11229 GACACCAT-CGAGGGCGTCAAGGCAAAGATCCAGGCCAAGGAGGGCACCCCCCCGGAGGC 11171 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | |||||||| | |||||| |||| ||| || ||||||||| Sbjct 11170 ACAGCGCCTCATCTTTGCGGGCAAGCTGCTGGAGGACGGTCGCTTGCTGTCCGACTACAA 11111 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| ||||||| |||||||||||||| Sbjct 11110 CATCCAGAAGGAGTCGACGCTTCATTTGGTGCTGCG 11075 >seq3336 Length=58286 Score = 105 bits (116), Expect = 7e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| || |||||| |||| ||| ||||| | Sbjct 18577 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGATGTC-AGGCCTTC 18519 Query 38304 GACAGCGTGCAA--ACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 | || | | ||| | || | || |||| ||| | | ||| || || ||||| Sbjct 18518 TATGTCGATCGACAACG-TCAAGGCCAAGATCCAGGACGAGGCGGGCATCCCGCCCGACG 18460 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| | || || ||||||||||| |||| || |||| |||||||| ||||||| Sbjct 18459 AGCAGAGCCTGATCTACGCGGGCAAGGAGCTCGAGGACGGCTGCACCCTCTCGGACTACA 18400 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 | || || ||||| |||||||| ||| |||| || Sbjct 18399 AAATACAGAAGGAGGCGACGCTTCATCTGGTCCT 18366 >seq2411 Length=24813 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 38270 GGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAA 38329 |||||| || |||||| | || || ||| | | ||| | | | | | || | || Sbjct 4227 GGGCAAGACGATCACCCTTGAGGTGGAGCCTTCGGACTCCATCGACAATGTCAAGGCCAA 4286 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| ||||| ||||| || ||| | || || ||||| ||||| | |||||||| || Sbjct 4287 GATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTTGCGGGCAAGCA 4346 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 |||||| |||| |||||||| |||||||||||||| ||||| ||||||| || | Sbjct 4347 GCTGGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTCCACCT 4406 Query 38450 GGTGCTGCG 38458 || ||||| Sbjct 4407 CGTTCTGCG 4415 >seq3150 Length=27292 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 ||||||||||||| || || | ||||||||| ||||| || |||| ||||||||| | Sbjct 1 CCGACCAACAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGG 60 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||||| ||||| |||| ||||| | ||||| || Sbjct 61 ACTACAACATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCG 103 >seq2823 Length=38084 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || || ||||| | ||||| | || | ||||||||| Sbjct 13086 AAGATCCAGGACAAGGAGGGCATCCCGCCCGACGAGCAGCGCTTAATCTTCGCGGGCAAG 13145 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||| || | || ||||| ||| |||||||||||||| | ||| |||| |||||| Sbjct 13146 GAGCTCGAGGTCGGCCGCACACTCTCAGACTACAACATCCAGAGGGATTCGACCCTGCAT 13205 Query 38448 TTGGTGCT 38455 | ||||| Sbjct 13206 CTCGTGCT 13213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500151467630080