Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3345 140 2e-27 >seq3345 Length=67807 Score = 140 bits (154), Expect = 2e-27 Identities = 225/321 (70%), Gaps = 7/321 (2%) Strand=Plus/Plus Query 517985 TTTCTCTTGAAAT-CTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043 || ||||| |||| ||| ||| ||||| ||||| | ||||||||| |||||||| Sbjct 25617 TTGCTCTTTAAATTCTTTAACTAACCATTGTACAATTTTTTCATCAAAATCGTCACCTCC 25676 Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103 || | |||| ||||| || ||| ||||| |||| || ||| | | | || Sbjct 25677 TAAATGTGTATCACCTGATGTTGCTAATACTTCAAAAACACCGTCTCCCACTTCAAGAAC 25736 Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 | |||||| || ||||| || | ||||||| || | | |||| || |||| Sbjct 25737 CGAAACATCAAAAGTACCACCCCCTAAGTCAAAAACTAGGA---TTGTTTCATTATCTT- 25792 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 ||||||| | |||||| | || || || || || || || |||||||| | | ||| Sbjct 25793 --TTTTATCTAAACCATAAGAAAGAGATGCGGCTGTGGGCTCGTTAATAATACGAAGAAC 25850 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | | |||||| ||| | || || |||||||| ||||| ||||| | ||| |||||||| Sbjct 25851 TTCTAAACCAGCGATTTTACCAGCGTCTTTAGTAGCTTGCCTTTGAGCATCATTAAAATA 25910 Query 518284 TGCAGGAACAGTAATAACGGC 518304 ||||||||| ||||| || || Sbjct 25911 TGCAGGAACCGTAATTACTGC 25931 Score = 140 bits (154), Expect = 2e-27 Identities = 220/314 (70%), Gaps = 17/314 (5%) Strand=Plus/Plus Query 322085 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCTAATGTTCTAAATACTCCA 322144 |||||||| || ||||| |||||||||| ||| | ||||||| | ||| || || Sbjct 25660 TCAAAATCGTCACCTCCTAAATGTGTATCACCTGATGTTGCTAATACTTCAAAAACACCG 25719 Query 322145 TTTGAGATATTCATTAAC-GAAACATCTAAAGTCCCAGCTCCTAAGTCATAAACAATTAC 322203 | | | |||| ||| |||||||| ||||| ||| | ||||||||| |||| | | Sbjct 25720 TCTCCCAC-TTCAAGAACCGAAACATCAAAAGTACCACCCCCTAAGTCAAAAACTAGGA- 25777 Query 322204 GTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTGC 322263 || ||| ||| ||||| | ||||||| || | ||||| ||| || Sbjct 25778 -----------TTGTTTCATTATCTTTTTTAT---CTAAACCATAAGAAAGAGATGCGGC 25823 Query 322264 AGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGT 322323 || || || ||||| || |||||| |||||||| || |||||| ||| || ||| Sbjct 25824 TGTGGGCTCGTTAATAATACGAAGAACTTCTAAACCAGCGATTTTACCAGCGTCTTTAGT 25883 Query 322324 TGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTATTAATAGG 322383 ||||| || || || |||||||||||||| || || ||||| ||||||| |||| || Sbjct 25884 AGCTTGCCTTTGAGCATCATTAAAATATGCAGGAACCGTAATTACTGCTTGTTTAACAGT 25943 Query 322384 TTTTTGTAAATATT 322397 || | ||| |||| Sbjct 25944 TTCTCCTAAGTATT 25957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780653085320872