Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1382 141 1e-28 seq2836 122 1e-22 seq3275 84.2 3e-11 >seq1382 Length=19088 Score = 141 bits (156), Expect = 1e-28 Identities = 319/477 (67%), Gaps = 13/477 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || | |||| | ||||| || ||| Sbjct 8613 CGGTCGAAGCGGCCGGGGCGGAGGAGCGCCGCGTCGAGCACATCGGCGCGGTTGGTGGCG 8672 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || | || | | ||| | | | ||||| |||||||| || || || | ||||||| Sbjct 8673 GCGAGCACGATGACGCCCGAGTTACCCTCGAAGCCGTCCATCTCGGTCAGGATCTGGTTG 8732 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGG---CATACCACCTGCCGA------ACGCTTC 11673 | |||||| || ||||| |||||| | ||| || | |||| ||||| | Sbjct 8733 AGCGTCTGCTCGCGCTCGTCGTTGCCGCCGCCCATGCCGCTGCCCGAGCCCGCACGCTGC 8792 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 || ||||| || ||||| || ||||| ||||| ||||| || |||| Sbjct 8793 CGGCCCACAGCATCGATCTCGTCAATGAAGACGATGCACGGCGCATTCTTCTTAGCCTCC 8852 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 |||| || || || || || |||| || || || ||||||||||| ||||| | | | Sbjct 8853 CCGAAGAGATCGCGCACGCGGCTCGCGCCCACGCCGACGAACATCTCGACGAACTCGGAG 8912 Query 11794 GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | || | |||||||| || | ||| || |||| || || ||||| || ||| Sbjct 8913 CCCGAGGCCGAGATGAAGGGGACGCCCGCCTCGCCCGCGACCGCGCGCGCGAGCAGCGTC 8972 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC 11911 || ||||| || || | || | | | ||||| || ||||||||||| || |||| Sbjct 8973 TTGCCCGTGCCCGGAGGCCCCTCCATGATCGCGCCGCGCGGGATCTTGGCGCCGAGCTTC 9032 Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGG 11968 |||| | || ||||||||||||| || |||||| || |||| ||||| Sbjct 9033 --GAGTACTTGGCCGGGTTCTTGAGGAAGTTGACGATCTCCGTGAGCTCCTGCTTGG 9087 >seq2836 Length=15749 Score = 122 bits (134), Expect = 1e-22 Identities = 855/1362 (63%), Gaps = 36/1362 (3%) Strand=Plus/Plus Query 109700 CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGT 109759 ||||| | |||| ||||||||| | || || ||||| ||| ||| || ||| | || Sbjct 8050 CAACAGG-TGCTGGTTGACCACCGCGAACTCGCCAGCGAGTACGCGGCGAGAGTACAGGT 8108 Query 109760 TAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGG 109819 | | |||||| || ||||| ||||| |||||||| ||||| || || || || || |||| Sbjct 8109 TGGACGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGCCGTCGACGCGGTGG 8168 Query 109820 GCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTG 109879 ||||||| || | || || ||| || || || | | || | | | | | Sbjct 8169 GCATGGGCGCGAGCAGCAGCGAGTTGCGTAGCCCGTGCATCGCAATCTTGGCCTTGAGGG 8228 Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 || |||| || | || | | | | ||| | ||||||| || || || | Sbjct 8229 CGGCCCAGTCCCAGCG-CGCCGA----GGGCGTCA-CGCCCCACATGTCGTACTGGAGCA 8282 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAAC-TCTCGTACGACCCCTCAACCTCGGCC--- 109995 | |||| || || | |||| | || | ||||| |||| ||| |||| Sbjct 8283 CGCCCT-TGCTCACGGGCGAGCCTTCATACGACGCGTACTTGCCCT---CCTTGGCCGCG 8338 Query 109996 AACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055 | ||| | || | || || || || ||||| ||||| || || || || || | Sbjct 8339 AGCTCACACGAGCACGTGAGCGCGGCGTGGTACATGGTCTCGAAGATCTGCGCGTTGAGC 8398 Query 110056 AGGCGAGACTCTTCACAGTCGAAGGGAAGAC-CACAAAGAATAAACACATCCGCTAGACC 110114 || | | || ||||||| || || | || || ||| || | || || || || Sbjct 8399 GCACGTGCGCCGTCTGAGTCGAAAGGCAGGCGCAGCAA-AATGAAGGCGTCGGCGAGTCC 8457 Query 110115 CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGG 110174 ||| || || || || || || || |||| || ||| ||| || || || ||||| Sbjct 8458 CTGCACGCCCAGGCCTATCGGCCGGTGCTGCAAGTTGGAGGTGCGCGCCTCCTCGACGGG 8517 Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATG 110234 ||| ||||| |||||||||| || ||||| || ||| || || | |||||| | || Sbjct 8518 GTAGTAGTTGTGGTCGATGACGCGGTTGAGGTTGCGCGTGACCGTGTACGTGATCGCGTG 8577 Query 110235 GAGTTTGTCGTAATCGAAC-GTTT----TCGTC-TCCTTATTGACATATTTGGGGAGAGC 110288 || || |||| |||||| | || |||| ||| || | || || || Sbjct 8578 CAGCTTCTCGTGGTCGAACTGCTTGACGCCGTCGACCTCGCGCACGAAGCGCGGCAGCGC 8637 Query 110289 AATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGT 110348 || || || || |||||||| | |||||| |||||| || | || || || Sbjct 8638 GATCGAGGCGAGGTTGCACACGGCGACCTCGTCCGGCGAGGTGTACTCGATGATCTCGGT 8697 Query 110349 ACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGC 110408 |||| |||||| | || || | ||||| ||| || || ||| |||| || Sbjct 8698 GCACAGGTTGGAGCAGCGGATCGTGCCAAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGC 8757 Query 110409 ATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCA 110468 ||||| || || ||||| || || || || || |||| || | ||| |||| || Sbjct 8758 GTCCTTGTACAGGATGTACGGCGTGCCCGTCTCGATCTGCGAGTCGAGGATGGTGAACC- 8816 Query 110469 TACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT--CCTC---CTCGTACTTGGTG 110523 ||| | || ||| || || | || ||| |||| |||| |||||||| |||| Sbjct 8817 -ACAGCTGCTGCGCGGGCACGCTCTTTCGCG---CCTTGCCCTCTTTCTCGTACTGGGTG 8872 Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAG 110583 |||| ||||||| ||| || | || ||||| || || || || Sbjct 8873 TACAGAGCCTCAAAGGCCTCGCCCCAGCTGTCGACGAGACCAGGGCACTCGTGCGGGCAC 8932 Query 110584 AAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATC 110643 | ||| ||||| | || |||| || | ||||||||| |||||||| | ||| | Sbjct 8933 ATGAGCGACCAGTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGGTCAGGCACCCAGAGA 8992 Query 110644 GCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAA 110703 || |||| ||||| || || ||||| || | || || || || || | | Sbjct 8993 GCGTAGAAGAGGTCGCGCGCGCGCGCCTCCTCCTTGCCGTGATTCTTCTTCAGGTCAAGA 9052 Query 110704 AAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---A 110760 ||||| | |||| |||||||| ||||| || || |||| || ||||| || Sbjct 9053 AAGTCGCACACGTCCGCATGCCATGGCTCGAGGTACACGGCGAAGGCGCCCTTGCGCTTG 9112 Query 110761 CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATT 110820 | || |||||| || ||||| || ||| | | | || | ||||| |||| | Sbjct 9113 CCGCCGCCCTGGTCGACGTAGCGCGCAGTGTTGTCGTACACGCGCAGCATGGGAACGAGG 9172 Query 110821 CCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATA 110880 || | | || || ||| | || || ||||| || |||| | | Sbjct 9173 CCGTTGCTCGTGCCGCCCGTGCCCTTGATGTACGAGCCCTTGGCGCGGATGTTGGTCACC 9232 Query 110881 TGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAA 110940 || || || |||||||| | ||| || || || ||| | |||| || | | Sbjct 9233 GCCACGCCGATGCCACCCGCGCTCTTGGATATCTGCGCGCACAGTTTGAGCGTCTCGAAG 9292 Query 110941 ATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGA 111000 || || || ||||| || |||| | | | || ||||| || |||||||| || | Sbjct 9293 ATGCCCTCGATCGAGTCCTCCTTCATCGAGAGCAGGAAGCACGAGGACATCTGCGGCTGC 9352 Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAAC 111042 ||||| ||||| ||||| | || || ||||| || ||||| Sbjct 9353 GGCGTGCCCGCGTTGAACATCGTGGGCGTCGCGTGCGTGAAC 9394 >seq3275 Length=32583 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 109705 AGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTC 109764 || ||| ||||| ||| | || || || || || ||||| || ||| | ||| | | Sbjct 7529 AGGTGCGGGTTGAGCACAAAGAACTCGCCCGCGAGCGTGCGCCGCGCGTACAGGTTGGAC 7470 Query 109765 GTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATG 109824 ||||| || ||||| ||||| |||||||| ||||| || || || || || ||||||||| Sbjct 7469 GTGTACGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGCCGTCGACGCGGTGGGCATG 7410 Query 109825 GGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTC 109860 || || | || || ||| || || || | |||| Sbjct 7409 GGCGCGAGCAGCAGCGAGTTGCGCAGCCCGTGCGTC 7374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588950880173600