Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3345 838 0.0 seq2756 89.7 6e-13 >seq3345 Length=67807 Score = 838 bits (928), Expect = 0.0 Identities = 794/1010 (79%), Gaps = 3/1010 (0%) Strand=Plus/Minus Query 179734 CTTCGTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTT 179793 |||| ||||| | ||||||| ||| | || || || | ||| | || || | |||| Sbjct 46429 CTTC-TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTT 46371 Query 179794 GGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTT-CATCGTCGCC 179852 ||||||| ||| ||| | || ||||| | |||| | | || |||| | | | || Sbjct 46370 GGTTCGGTTGTCTAATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCT 46312 Query 179853 TTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTC 179912 || ||||| || || || || || |||||||| |||||||| || || |||||||| || Sbjct 46311 TTTATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTA 46252 Query 179913 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTT 179972 | || || |||||||||||||||||||| || ||||| ||| ||||| || ||| || Sbjct 46251 CTTTACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTT 46192 Query 179973 CACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCT 180032 |||||||| || ||||||||||| || || | || |||||||| || ||||||||| || Sbjct 46191 CACTTCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACT 46132 Query 180033 TTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGG 180092 | |||||| || || ||||||||| | ||||| | | ||| ||||| |||||||||||| Sbjct 46131 TACCAACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGG 46072 Query 180093 GAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTC 180152 || |||||||| || | |||||||| || |||||||| || || | || |||||||| Sbjct 46071 GAGCTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTA 46012 Query 180153 GCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCA 180212 |||||||||||||| |||||| | |||| || ||||||||||||| ||||| || | Sbjct 46011 GCTGCAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGT 45952 Query 180213 ATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 180272 ||||| || || || ||||| || ||||||| ||||||||| |||||||| ||||||||| Sbjct 45951 ATGCCTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAAC 45892 Query 180273 ATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTC 180332 ||||| |||||||| ||||||||||| || || || ||||| ||||| ||||| || ||| Sbjct 45891 ATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTC 45832 Query 180333 TCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAG 180392 || || ||||||||||| || || || || || || | |||||||| ||||| | || Sbjct 45831 TCAGCTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAA 45772 Query 180393 TCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCA 180452 || ||||||||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct 45771 TCTGCTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCT 45712 Query 180453 CATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTT 180512 || || ||||| |||||||| ||||||| || || || ||||||||||| ||| ||||| Sbjct 45711 CACGGTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTT 45652 Query 180513 CACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGC 180572 |||||| |||| | || ||||| || ||||| |||||||| || | |||| ||| Sbjct 45651 CACTTCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCT 45592 Query 180573 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGT 180632 || |||||||||||||| ||||||||||||||||||||||| | | ||| |||||| Sbjct 45591 ACTATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGT 45532 Query 180633 CGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATG 180692 ||||| ||||||||||||| ||| | || ||||| | || ||||||||||||||| Sbjct 45531 CGTGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATG 45472 Query 180693 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGAGTC 180742 ||||||||||| |||||||||||||| || || || || |||| |||||| Sbjct 45471 CACGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 628 bits (696), Expect = 3e-175 Identities = 741/1003 (74%), Gaps = 0/1003 (0%) Strand=Plus/Plus Query 181434 TTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTT 181493 ||||||||||||| || || ||||| || || || || || ||||||||||| ||||| | Sbjct 59803 TTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGACTTCTTCTAT 59862 Query 181494 TTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGT 181553 | || ||| | || || | || || ||||| ||||| | |||||| || || || | Sbjct 59863 TCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTCGTAACATCTT 59922 Query 181554 GGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTG 181613 ||||||| ||||| | || ||| | ||| || || ||| ||||| || || |||| Sbjct 59923 GGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTAACTGCTGCTG 59982 Query 181614 TGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTC 181673 | || || |||||| || ||||||||| || || || || | ||||| |||||||| | Sbjct 59983 TATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGACCTGAAGCAC 60042 Query 181674 AGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 181733 | || || || || ||| ||||| |||| || || ||||||||| | || || |||| Sbjct 60043 AAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATTGCACTACACG 60102 Query 181734 GAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCGTCTAATCGGAA 181793 | | || | | | || ||||| || || || ||||| | |||||| || | || | Sbjct 60103 GTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGTTTAGTAGGTA 60162 Query 181794 TCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTC 181853 | || || ||||| || || ||||| || ||||| || || |||||||| | || || | Sbjct 60163 TTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTTACAGTTTTCC 60222 Query 181854 TCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGA 181913 | | || ||| | || ||| | |||||||||||||| || ||||| ||||| ||||| | Sbjct 60223 TAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGTGTAGCGGCAA 60282 Query 181914 TTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATA 181973 ||||||| |||||||| ||||| || || || || || ||||| || || || ||||| | Sbjct 60283 TTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAACCCATTCCACA 60342 Query 181974 TGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCG 182033 ||||||| || ||||||||||| ||||| || ||||| | ||| ||||| |||| ||| | Sbjct 60343 TGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCATGGTGCGACTG 60402 Query 182034 TGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAA 182093 | ||||| ||||| | |||| ||||| || || |||||| |||||| | ||| Sbjct 60403 TAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCATTCACTCCAA 60462 Query 182094 CTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCG 182153 | ||| |||||| || || ||||||||||| || ||||| |||||||||||||| || | Sbjct 60463 CACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATTTTTG 60522 Query 182154 GTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGG 182213 || |||| || || ||| | ||||| || ||||| ||||| || || || || | Sbjct 60523 GTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTACCAGTAGCTG 60582 Query 182214 GTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 182273 || | ||||||||| | ||||||||| | ||| | || || ||||| ||||| || || | Sbjct 60583 GTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGTGCATACGATT 60642 Query 182274 TTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGA 182333 | || || ||||| | ||||| |||||||||| || ||||| || |||||||| || | Sbjct 60643 TCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTCTACACGAAAA 60702 Query 182334 ACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGA 182393 ||| || | ||||||||| | ||||| ||| | || || |||||||| ||||| | Sbjct 60703 ACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAACCTCATGAAA 60762 Query 182394 ACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 |||| | ||||||||||| ||| |||| | || ||||| || Sbjct 60763 ACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCT 60805 >seq2756 Length=33385 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| || ||||||| || | ||||||||||||||| Sbjct 12688 TTCCTCAGTAGCTCAGGGGTAGAGCGATCGGCTGTTAACCGGTTTGTCGTAGGTTCAAAT 12629 Query 141314 CCTACCTGGGGAGT 141327 |||||||||||||| Sbjct 12628 CCTACCTGGGGAGT 12615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610370766576480