Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3345 749 0.0 >seq3345 Length=67807 Score = 749 bits (830), Expect = 0.0 Identities = 776/1014 (77%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 169400 AATTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTC 169459 |||| |||| ||| | || ||||| | |||||| | || |||||||||| ||| || Sbjct 46418 AATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTC 46359 Query 169460 TAATGATTCCATGCT-TACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCA 169518 ||||| |||| | || |||| ||||| || || | | |||| || || |||||| Sbjct 46358 TAATG-TTCCCTACTCTACTTACAGCTATTTCAGCTTACGTTATTGCTTTTATCGCAGCA 46300 Query 169519 CCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAAC 169578 ||||| || |||||||| || ||| | || ||||| || |||||| | | || || ||| Sbjct 46299 CCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAAC 46240 Query 169579 AACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCA 169638 ||||||||||||||||| || |||||| |||||||||||||| | |||||||||||| Sbjct 46239 AACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCA 46180 Query 169639 ATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTA 169698 ||||||||||| || | | ||||| ||| | || || |||||| |||| || | || Sbjct 46179 ATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTT 46120 Query 169699 ATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATAC 169758 | ||||||||| | |||||| | | || ||||| || | ||||||| || || ||| Sbjct 46119 GTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTAC 46060 Query 169759 AGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTC 169818 | |||| |||||||| |||||||||||||| | ||| || |||||| |||| |||| Sbjct 46059 CGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCT 46000 Query 169819 GCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGT 169878 || |||||| || | |||||| | ||||| ||||| ||||| ||||||||||| |||||| Sbjct 45999 GCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGT 45940 Query 169879 ATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCAT 169938 ||||| |||||||||||||| ||| | || |||||||| ||||| ||||| || ||||| Sbjct 45939 ATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCAC 45880 Query 169939 CCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCAT 169998 || ||||||||| || || || || | ||||| || ||| |||||||||| ||||| Sbjct 45879 CCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCAC 45820 Query 169999 GGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTAT 170058 ||||| || || ||||||||||||||| | ||||| || ||| | || || ||||| Sbjct 45819 GGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTAC 45760 Query 170059 GGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTT 170118 ||||| |||||||| ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct 45759 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTA 45700 Query 170119 GGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTA 170178 |||||||| ||||||| || |||||||||||||||||| | || |||||| ||||| Sbjct 45699 GGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTCGTCCTA 45640 Query 170179 GCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 170238 | | || || || || || | |||||||| ||||||||| | || ||||||||| Sbjct 45639 GGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTATGGCATTC 45580 Query 170239 AACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCA 170298 ||| | || ||||||||||| ||||| |||||||| ||| | | || | || Sbjct 45579 AACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTAATCAAC 45520 Query 170299 ACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAAT 170358 || |||| ||| |||| ||| | ||||| | ||||||||||||||||| || | || Sbjct 45519 ACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAAC 45460 Query 170359 GCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACACAGGTTGCTTTA 170412 || ||||||||||| ||||| ||||| ||| ||||||| || |||||| || Sbjct 45459 GCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTCTCTACCAGTTGCTCTA 45406 Score = 556 bits (616), Expect = 1e-153 Identities = 746/1039 (72%), Gaps = 23/1039 (2%) Strand=Plus/Plus Query 170529 tttGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 || ||| || |||| |||||| ||||| | || ||||| || ||| | ||||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 ||| | || | || ||||||| |||| | | ||||||||| | || | ||| ||| Sbjct 59853 CTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTC 59912 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || ||||| ||||| || || ||| | || || | || || ||||||||||||||| Sbjct 59913 GTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTA 59972 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || || || || || |||| || |||||||| || || | | |||||| Sbjct 59973 ACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGA 60032 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 ||||||||||||||| | ||||||||| ||| | || ||| | ||| ||| | Sbjct 60033 CCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATT 60092 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 ||| |||| || ||||| | || |||||| || ||||| ||||||||||| | Sbjct 60093 GCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGT 60152 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 | ||||| || | |||||||||||| |||| ||||||| | ||||| || ||| | Sbjct 60153 TTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTT 60212 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTC-AGCACAGTTGGTTCTTCGCACCATCATTCGG 171007 | | || || | || || |||||| |||| ||||||||||| |||||| || || Sbjct 60213 ACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCA-AGTTGGTTCTTTGCACCAAGTTTTGG 60271 Query 171008 TGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAA 171067 ||| || |||||||| |||| | | ||| ||||||||||||||||| || | || Sbjct 60272 TGTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAA 60331 Query 171068 TCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCA 171127 ||||| ||||||||||| || || || || || ||||| || ||| ||||||| ||||| Sbjct 60332 CCCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCA 60391 Query 171128 TGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAAT 171187 |||||| || || ||||||| | | ||||| | | || ||| || Sbjct 60392 TGGTGCGACTGTAGAGAACACTCTTTTCGAAGA------TGGTGATGCTGCGAA------ 60439 Query 171188 TCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGAT 171247 || |||||||| || ||| ||||| |||||| |||||| ||| | Sbjct 60440 ---------CACTTTCCGTGCATTCACTCCAACACAATCAGAAGAGACTTACTCAATGGT 60490 Query 171248 TACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTT 171307 ||| |||||| | |||||||| ||||| |||||| |||| ||||||||||| | | || Sbjct 60491 TACTGCAAACCGTTTCTGGTCTCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTT 60550 Query 171308 ACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 171367 ||||||| | ||| | ||||| || || |||||||||||| | || ||||| || Sbjct 60551 ACACTTCTTCATGCTTTTCGTACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGT 60610 Query 171368 AGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGA 171427 |||| ||||||| ||||| | ||||||||||| || || |||||| | ||||| ||||| Sbjct 60611 AGGTTTAGCACTAAACCTGCGTGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGA 60670 Query 171428 AGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGC 171487 |||||| || ||||| || |||||||| || || | ||||| ||||||||||| | || Sbjct 60671 AGACCCTGAATTCGAAACATTCTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGC 60730 Query 171488 ATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACC 171547 |||||| | || || ||||| ||||| |||||| | ||||| || || || |||| Sbjct 60731 GTGGATGGCTGCACAAGATCAACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACC 60790 Query 171548 AAGAGGTAACGCACTTTAA 171566 | | || ||||| |||||| Sbjct 60791 ACGTGGAAACGCCCTTTAA 60809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579188096574080