Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq3345 881 0.0 >seq3345 Length=67807 Score = 881 bits (976), Expect = 0.0 Identities = 819/1037 (79%), Gaps = 2/1037 (0%) Strand=Plus/Minus Query 163772 CTCCTGGGAATCATTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTG 163831 || |||||| |||||||| |||| | ||||| || | ||| | || || ||||||| Sbjct 46429 CTTCTGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTG 46370 Query 163832 GTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACCATCTGTTT-CATCGTCGCCT 163890 |||||| ||| ||| ||||||| || ||| |||| | || | || | | | || | Sbjct 46369 GTTCGGTTGTCTAATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTT 46311 Query 163891 TCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCA 163950 | |||| || || || || || ||||||||||| ||||| || ||||| ||||| || Sbjct 46310 TTATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTAC 46251 Query 163951 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTC 164010 | || || |||||||||||||||||||| || ||||| || || || || ||| ||| Sbjct 46250 TTTACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTC 46191 Query 164011 ACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTT 164070 |||||||||| || |||||||| || || | ||||| ||||| |||||||||||| ||| Sbjct 46190 ACTTCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTT 46131 Query 164071 TCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGG 164130 |||||| || || ||||||||| | || ||| | | ||| ||||| ||||||||||||| Sbjct 46130 ACCAACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGG 46071 Query 164131 AACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTG 164190 | || ||||||||||| ||||||||||| ||||| |||||||||| ||| || || || | Sbjct 46070 AGCTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAG 46011 Query 164191 CAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAA 164250 | |||||||| ||||| ||| | |||| || ||||||||||||| ||||| || | | Sbjct 46010 CTGCAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTA 45951 Query 164251 TGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACA 164310 |||| || || |||||||| || ||||||| |||| | || |||||||| |||||||||| Sbjct 45950 TGCCTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACA 45891 Query 164311 TCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCA 164370 |||| |||||||| ||||| ||||| || |||||||| ||||| || |||||||| ||| Sbjct 45890 TCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCT 45831 Query 164371 GTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGT 164430 || |||||||||||||| || ||||| || || | |||||||| || || | || | Sbjct 45830 CAGCTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAAT 45771 Query 164431 CCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTC 164490 | ||||| ||||||||||| |||||||||||||| || |||||||| ||||| |||| Sbjct 45770 CTGCTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTC 45711 Query 164491 ACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 164550 |||||||||| |||||||| |||||||||||||||||||||||||||| ||| | | | Sbjct 45710 ACGGTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTC 45651 Query 164551 ACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCA 164610 ||||| |||| | ||| ||||| || ||||| |||||||| || | | ||||| | | Sbjct 45650 ACTTCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTA 45591 Query 164611 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTC 164670 | |||||||||||||| ||||||||||||||||||||||| | | ||| || |||| Sbjct 45590 CTATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTC 45531 Query 164671 GTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGC 164730 |||| ||||||||||||| ||| |||| ||||| | || |||||||||||||||| Sbjct 45530 GTGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGC 45471 Query 164731 ACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGAGTCCACTCCTGTCG 164790 |||||||||||||||||||||||||||| ||||| ||||||| |||||| || || | Sbjct 45470 ACGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTCTCTACCAGTTG 45411 Query 164791 CTCTGACTGCACCCGCT 164807 |||| ||| || ||| Sbjct 45410 CTCTAGTTGCTCCAGCT 45394 Score = 708 bits (784), Expect = 0.0 Identities = 767/1014 (76%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 165194 TTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGA 165253 |||||| | | ||||||||||| || || || ||||||||||| ||||| ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 165254 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 165313 |||||||| || || ||| | || ||| | || |||||||| ||||| | ||||||| Sbjct 59853 CTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTC 59912 Query 165314 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTT 165373 | || |||||| |||||||| | |||||||| | || || || ||||| || Sbjct 59913 GTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTA 59972 Query 165374 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 165433 ||||| || || |||||||| || || ||||||||| || || || ||| ||||||| Sbjct 59973 ACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGA 60032 Query 165434 CCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 165493 ||||| || ||||| || || | ||| ||||| |||| || || ||||||||| | Sbjct 60033 CCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATT 60092 Query 165494 GCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACGT 165553 || || ||||| | || | | ||||||||||| ||| | |||||||| | || ||| Sbjct 60093 GCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGT 60152 Query 165554 CTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTT 165613 | | ||||| ||||| ||||| || || || ||||||||||| ||||| || || ||| Sbjct 60153 TTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTT 60212 Query 165614 AGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGG 165673 | || || || | |||||| | |||||| | |||||||| || || ||| ||| || Sbjct 60213 ACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGT 60272 Query 165674 GTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAAT 165733 || || ||||| ||| | |||||||| ||||||||||| ||||| |||||||| | || Sbjct 60273 GTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAAC 60332 Query 165734 CCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCAT 165793 || || || |||||||| || || |||||||| |||||||| || || | ||| || ||| Sbjct 60333 CCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCAT 60392 Query 165794 GGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCA 165853 |||| || |||||||| ||||| | |||||||||| | ||| || |||||| ||| Sbjct 60393 GGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCA 60452 Query 165854 TTTGACT-CTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTC 165912 || ||| | || ||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 60453 -TTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTC 60511 Query 165913 TCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGT 165972 |||||| || ||| |||| || ||| ||| | ||||| || ||||| ||||| || || Sbjct 60512 TCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGT 60571 Query 165973 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 166032 || || ||| | ||||||||| | ||||||||| | ||| | || || ||||| || Sbjct 60572 ACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCG 60631 Query 166033 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTT 166092 ||| || || || || || |||||| | ||||| ||||||||||| || || ||||| || Sbjct 60632 TGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATT 60691 Query 166093 CTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCA 166152 |||||||||||||| || | ||||||||| | ||||| ||| |||| || ||||| Sbjct 60692 CTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCA 60751 Query 166153 ACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 ||| ||||| ||||| |||||||||| || || || || | || ||||| || Sbjct 60752 ACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCT 60805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556901047157280