Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3345 755 0.0 >seq3345 Length=67807 Score = 755 bits (836), Expect = 0.0 Identities = 776/1012 (77%), Gaps = 2/1012 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||||| |||| | || |||||| | |||||| | || |||||||||||||| || Sbjct 46416 TTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTA 46357 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTT-CATCGTTGCATTCATTGCAGCACC 171938 ||| |||| | | || ||||| || |||| | | |||| || || |||||||| Sbjct 46356 ATGTTCCCTACTCTACTTACAGCTATTTCA-GCTTACGTTATTGCTTTTATCGCAGCACC 46298 Query 171939 TCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 171998 ||| || |||||||| || ||| | || |||||||| |||||| | | || || ||||| Sbjct 46297 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAACAA 46238 Query 171999 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTAT 172058 ||||||||||||||| || |||||| |||||||| || ||| | ||||||||||| || Sbjct 46237 CATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCAAT 46178 Query 172059 CTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAAT 172118 ||||||||| || | | ||||| ||| | ||||| |||||| |||| || | || | Sbjct 46177 CTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTTGT 46118 Query 172119 CTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 172178 ||||||||| | || ||| | | || ||||| || | ||||||| || || ||| | Sbjct 46117 TTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTACCG 46058 Query 172179 ATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGC 172238 |||||||| | |||||||| ||||| || | ||||| || ||| | ||||||| ||| Sbjct 46057 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGC 45998 Query 172239 TGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 172298 || ||| | | || ||| ||||||| ||||| ||||| ||||||||||| |||||||| Sbjct 45997 AGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGTAT 45938 Query 172299 CTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCC 172358 ||| ||||| |||||||| ||| | || |||||||| ||||| ||||| || ||||| || Sbjct 45937 CTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 45878 Query 172359 TTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGG 172418 ||||||||| || || || || | || || || ||| |||||||||| |||||||| Sbjct 45877 ATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCACGG 45818 Query 172419 TTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGG 172478 |||| |||| || || ||||||||| | || || ||||| ||||| |||||||| Sbjct 45817 TTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTACGG 45758 Query 172479 ATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 172538 ||||||||||| ||||||||||| || |||||||| || ||||| ||||||||||| || Sbjct 45757 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTAGG 45698 Query 172539 TCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 |||||| ||||||| || ||||| |||||||||||| | ||||||||| |||||| Sbjct 45697 TCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTCGTCCTAGG 45638 Query 172599 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 172658 | || || || || || | |||||||| ||||||||| | ||| ||||||||||| Sbjct 45637 TGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTATGGCATTCAA 45578 Query 172659 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTAC 172718 ||| |||||||||||||||||||| |||||||||||| | | ||| | | || Sbjct 45577 CCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 45518 Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778 |||| |||| |||||||| | ||||||||||||||||||||||||| || | || || Sbjct 45517 TTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAACGC 45458 Query 172779 ACACAACTTCCCATTAGACCTTGCTTCTGCAGAGTCTTCAACAGTTGCTTTA 172830 ||||||||||| |||| || ||| ||| |||||| | |||||||| || Sbjct 45457 TCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTCTCTACCAGTTGCTCTA 45406 Score = 515 bits (570), Expect = 5e-141 Identities = 738/1039 (71%), Gaps = 23/1039 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 || ||| || |||| |||||| ||||| | || |||||||| ||| | ||||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 ||| | || | || ||||| | ||| || | ||||||||| | || | ||| ||| Sbjct 59853 CTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTC 59912 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || ||||| ||||| || || ||| | ||| ||| | || |||||| ||||| || Sbjct 59913 GTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTA 59972 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || || || || || |||| || |||||||| || || | | |||||| Sbjct 59973 ACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGA 60032 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 ||||||||||||||| || |||||||| ||| | || || || ||| ||| | Sbjct 60033 CCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATT 60092 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 ||| |||| || ||||| | || |||||| || | |||||||||||||| | Sbjct 60093 GCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGT 60152 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 | ||||| || | |||||||||||| |||| ||||||| | ||||| || ||| | Sbjct 60153 TTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTT 60212 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGC-AGCACAGTTGGTTCTTCGCACCTTCATTCGG 173429 | | || || | ||||| |||| | |||| ||||||||||| ||||| || || Sbjct 60213 ACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCA-AGTTGGTTCTTTGCACCAAGTTTTGG 60271 Query 173430 TGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAA 173489 ||| || ||||| || |||| | | ||| ||||||||||||||||| || | || Sbjct 60272 TGTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAA 60331 Query 173490 TCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCA 173549 ||||| ||||||||||| || || || || || ||||| || ||||||||||| ||||| Sbjct 60332 CCCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCA 60391 Query 173550 TGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGAT 173609 |||||| || || ||||||| | | |||| || ||| | | || Sbjct 60392 TGGTGCGACTGTAGAGAACACTCTTTTCGAAG------------ATGGTGATGCTGCGA- 60438 Query 173610 TCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGAT 173669 || |||||| | ||||| ||| ||||| |||||| ||||| ||| | Sbjct 60439 -------AC-ACTTTCCGTGCATTCACTCCAACACAATCAGAAGAGACTTACTCAATGGT 60490 Query 173670 TACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTT 173729 ||| || ||| | |||||||| ||||| |||||| | ||||| || ||||| | | || Sbjct 60491 TACTGCAAACCGTTTCTGGTCTCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTT 60550 Query 173730 ACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGT 173789 ||||||| ||||| | |||||||| || |||||||||||| | || ||||| || Sbjct 60551 ACACTTCTTCATGCTTTTCGTACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGT 60610 Query 173790 AGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGA 173849 |||| | ||||| ||||| | |||||||| || || || |||||| | ||||| ||||| Sbjct 60611 AGGTTTAGCACTAAACCTGCGTGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGA 60670 Query 173850 AGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGC 173909 ||| || || ||||| || |||||||| || || | ||||| ||||||||||| | || Sbjct 60671 AGACCCTGAATTCGAAACATTCTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGC 60730 Query 173910 ATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACC 173969 |||||| | | ||||||||| ||||| |||||| | || || || || || |||| Sbjct 60731 GTGGATGGCTGCACAAGATCAACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACC 60790 Query 173970 AAGAGGTAACGCACTTTAA 173988 | | || ||||| |||||| Sbjct 60791 ACGTGGAAACGCCCTTTAA 60809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588026119616320