Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq3345 785 0.0 >seq3345 Length=67807 Score = 785 bits (870), Expect = 0.0 Identities = 759/980 (77%), Gaps = 12/980 (1%) Strand=Plus/Minus Query 167109 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCA 167168 ||| | ||| | || || | ||||||||||| ||| ||| ||||||| | ||| || Sbjct 46395 ACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTAATGTTCCCTACTCTACTTACA 46336 Query 167169 GCAACCATCTGTTT-CATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTAT 167227 || | || | || | | || || || ||| || ||||| || || ||||||||||| Sbjct 46335 GCTATT-TCAGCTTACGTTATTGCTTTTATCGCAGCACCTCCAGTAGATATCGATGGTAT 46277 Query 167228 CCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 167287 ||| || |||||||||||||| || | || || |||||||||||||||||||| || || Sbjct 46276 CCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAACAACATCATCTCTGGTGCTGTAGT 46217 Query 167288 TCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGA 167347 ||| ||| || ||||| ||| |||||||||| || ||||||||||| || | |||| Sbjct 46216 TCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCAATCTGGGAAGCTGCTTCAATCGA 46157 Query 167348 CGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCAT 167407 |||||| | ||||| |||||| ||| |||||| || |||||||||||| | ||||| | Sbjct 46156 TGAGTGGCTATACAACGGTGGTACTTACCAACTAGTTGTTTTCCACTTCTTCATTGGTGT 46097 Query 167408 CTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGAT 167467 | ||| || || |||||||||||||| || ||||||||||| ||||||||||| ||||| Sbjct 46096 ATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTACCGTCTAGGTATGCGTCCATGGAT 46037 Query 167468 CTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTT 167527 ||||||||| | ||| |||||||| |||||||||||||| |||||| | |||| || | Sbjct 46036 CTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCGTAATCTACCCAAT 45977 Query 167528 CGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACAT 167587 |||||||||||||||||| || | |||||||| |||||||||||||| ||||||| ||| Sbjct 45976 CGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGTATCTCTGGTACTTTCAACTTCAT 45917 Query 167588 GCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGC 167647 |||||| |||||||| |||||||||||||| |||||||| ||||| ||||| || ||||| Sbjct 45916 GCTTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGC 45857 Query 167648 TGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCT 167707 ||| |||||||| |||||||| ||| || |||||||||||||| || || || || || Sbjct 45856 TGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCACGGTTCTCTAGTAACTTCATCTCT 45797 Query 167708 GGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGA 167767 | |||||||| || || | || || ||||| ||||||||||||||||| ||||| Sbjct 45796 AATCCGTGAAACTACTGAGAACGAATCTGCTAACTACGGTTACAAGTTCGGTCAAGAAGA 45737 Query 167768 AGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGC 167827 |||||| || |||||||| || ||||| |||||||| ||||| || ||||||||||||| Sbjct 45736 AGAGACTTACAACATCGTTGCAGCTCACGGTTACTTAGGTCGTCTATTCTTCCAATACGC 45677 Query 167828 ATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTAT 167887 || ||||||||||| || | || |||||| || | | || ||||| || |||||||| Sbjct 45676 TTCATTCAACAACTCACGTGCACTTCACTTCGTCCTAGGTGCTTGGCCAGTAGTTGGTAT 45617 Query 167888 CTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTCAA 167947 ||||| ||||||||| ||||||||||||||||| Sbjct 45616 CTGGTTAACATCTATGGGTGTAGCTACTATGGCATTCAACCTAAACGGTTTCAACTTCAA 45557 Query 167948 CCAGTCTATCCTTGAT-----AGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCTC 168002 |||||| | | ||| || || |||| || | |||||||| ||| | || Sbjct 45556 CCAGTCAGTTGTAGATTCACAAGGTCGTGTAA---TCAAC--ACTTGGGCTGACATTCTT 45502 Query 168003 AACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTC 168062 |||||| | || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 45501 AACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTA 45442 Query 168063 GACCTTGCTGCTGCTGAGTC 168082 || || ||||||| |||||| Sbjct 45441 GATCTAGCTGCTGGTGAGTC 45422 Score = 677 bits (750), Expect = 0.0 Identities = 760/1014 (75%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 168483 TTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGA 168542 |||||| | | ||||||||||| || || || ||||||||||| ||||| ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 168543 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTC 168602 |||||||| || || ||| | || ||| | || |||||||| ||||| | | ||||| Sbjct 59853 CTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTC 59912 Query 168603 GTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 168662 || || |||||| |||||||| | |||||||| | || || || ||||| || Sbjct 59913 GTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTA 59972 Query 168663 ACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 168722 ||||| || || |||||| || | ||||||||| || || || ||| ||||||| Sbjct 59973 ACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGA 60032 Query 168723 CCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTG 168782 ||||| |||||||| || || | |||| ||| |||| || || ||||||||| | Sbjct 60033 CCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATT 60092 Query 168783 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACGT 168842 || || ||||| | || | | |||| |||||| ||| | |||||||| | || ||| Sbjct 60093 GCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGT 60152 Query 168843 CTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTT 168902 | | ||||| ||||| ||||| || || || ||||||||||| ||||| || || ||| Sbjct 60153 TTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTT 60212 Query 168903 AGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGG 168962 | || || || | |||||| | |||||| | |||||||| || || ||| ||| || Sbjct 60213 ACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGT 60272 Query 168963 GTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAAT 169022 || | ||||| ||||| |||||||| ||||||||||| ||||| |||||||| || || Sbjct 60273 GTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAAC 60332 Query 169023 CCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCAT 169082 ||||| || |||||||| ||||| ||||| | || || ||||| || | ||| |||||| Sbjct 60333 CCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCAT 60392 Query 169083 GGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCA 169142 |||| || |||||||| ||||| | |||||||||| || || |||||| ||| Sbjct 60393 GGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCA 60452 Query 169143 TTTGACAGC-ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTC 169201 || || | || || ||| ||||| || ||||||||||||||||||||||||||||| Sbjct 60453 -TTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTC 60511 Query 169202 TCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGT 169261 |||||| |||||| |||| ||| ||| ||| | ||||| || ||||| ||||| || || Sbjct 60512 TCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGT 60571 Query 169262 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 169321 || || ||| | ||||||||| | ||||||||| | ||| | || || ||||| || Sbjct 60572 ACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCG 60631 Query 169322 TGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTT 169381 ||| || || || ||||| |||||| | ||||| |||||||| || || || || || || Sbjct 60632 TGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATT 60691 Query 169382 CTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCA 169441 |||||| || |||| ||| | || |||||| | ||||| ||| | || | ||||| Sbjct 60692 CTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCA 60751 Query 169442 ACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||||||||| ||||| | ||||||||||| ||||| || || || || ||||| Sbjct 60752 ACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCT 60805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560584090068800