Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq3345 836 0.0 >seq3345 Length=67807 Score = 836 bits (926), Expect = 0.0 Identities = 807/1036 (78%), Gaps = 0/1036 (0%) Strand=Plus/Minus Query 215285 TGGGACGAGTTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTT 215344 ||||| | || || | ||| | ||||| ||||| || | | ||| |||||||||| Sbjct 46425 TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTC 46366 Query 215345 GGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATC 215404 ||| || ||| | ||| || || |||||| | || | | | || || ||| Sbjct 46365 GGTTGTCTAATGTTCCCTACTCTACTTACAGCTATTTCAGCTTACGTTATTGCTTTTATC 46306 Query 215405 GCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTAT 215464 || |||||||| || |||||||| || ||| | |||||||||||||||||| || | || Sbjct 46305 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTAC 46246 Query 215465 GGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTC 215524 || ||||||||||||||||||||||| || || ||||||||||| ||||| | |||||| Sbjct 46245 GGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTC 46186 Query 215525 TACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAA 215584 ||||| ||||||||||| || || | || || ||||| ||||| ||||| ||| |||| Sbjct 46185 TACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAA 46126 Query 215585 CTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTT 215644 || ||| | ||||||||| |||||||| | | ||| ||| ||| | ||||||| ||| Sbjct 46125 CTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTT 46066 Query 215645 TCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCT 215704 |||||| | |||||||| | || |||||||||||||||| ||| || || ||| |||| Sbjct 46065 TCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCA 46006 Query 215705 GCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCA 215764 || | |||||||||| | | || ||| ||||||| ||||||||||| |||| |||||| Sbjct 46005 GCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCT 45946 Query 215765 CTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTG 215824 || || |||||||| || ||||||| |||| |||| ||||| |||||||||||||| || Sbjct 45945 CTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTT 45886 Query 215825 ATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCA 215884 |||||||||||||||||| | ||||| |||||||| ||||||||||| | ||||| || Sbjct 45885 ATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCT 45826 Query 215885 ATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAG 215944 ||||||||||| || || || || ||||||||| | || || |||||| | |||||| Sbjct 45825 ATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCT 45766 Query 215945 AACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGT 216004 |||||||||||||||||||| ||||| || || || ||||||||||| || || |||||| Sbjct 45765 AACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGT 45706 Query 216005 TACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTC 216064 ||||| ||||| || ||||||||||||| || |||||||||||| | ||||||||| Sbjct 45705 TACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTC 45646 Query 216065 TTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATG 216124 |||| | || | || || || |||||||| ||| | |||||||| | |||||| Sbjct 45645 GTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTATG 45586 Query 216125 GCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTT 216184 || |||||||| ||||||||||||||||||||||| || ||||| || ||| || Sbjct 45585 GCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTA 45526 Query 216185 ATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAG 216244 || |||||||| ||| |||||||| | || || ||||||||||| ||||||||| Sbjct 45525 ATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAG 45466 Query 216245 CGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAATCAACACCAGTTGCTTTA 216304 |||||||||||||||||||| |||| | ||||||| ||| || |||||||||| || Sbjct 45465 CGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTCTCTACCAGTTGCTCTA 45406 Query 216305 ACTGCACCTACTATTG 216320 ||| || || ||| Sbjct 45405 GTTGCTCCAGCTGTTG 45390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745049822269760