Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq3345 881 0.0 >seq3345 Length=67807 Score = 881 bits (976), Expect = 0.0 Identities = 823/1042 (79%), Gaps = 3/1042 (0%) Strand=Plus/Minus Query 181780 CTTCGTGGGAACAATTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTT 181839 |||| ||||| |||||||||| ||| | || || || | || | || || | |||| Sbjct 46429 CTTC-TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTT 46371 Query 181840 GGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGTTT-CATCGTTGCT 181898 |||| ||| || ||| |||| ||||| | | || | || | || | | ||||| Sbjct 46370 GGTTCGGTTGTCTAATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCT 46312 Query 181899 TTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTC 181958 || | ||||||||||| || |||||||| |||||||| || || || |||||||| || Sbjct 46311 TTTATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTA 46252 Query 181959 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTT 182018 | || || ||||||||||||||||||||||| || ||| || ||||| || ||| || Sbjct 46251 CTTTACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTT 46192 Query 182019 CACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCT 182078 |||||||||||||||||||||||||| ||| | ||||||||||| || ||||||||| || Sbjct 46191 CACTTCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACT 46132 Query 182079 TTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGG 182138 | |||||| ||||||||||||||| | || || | | || ||||| || ||||||||| Sbjct 46131 TACCAACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGG 46072 Query 182139 GAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTC 182198 || ||||||||||| ||||||||||||| ||||||||||| || | ||| |||||||| Sbjct 46071 GAGCTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTA 46012 Query 182199 GCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCA 182258 |||||||||||||| |||||| || |||| || ||||||||||||| ||||| |||| Sbjct 46011 GCTGCAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGT 45952 Query 182259 ATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAAC 182318 ||||| || || ||||| || || ||||||| ||| | || |||||||||||||||||| Sbjct 45951 ATGCCTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAAC 45892 Query 182319 ATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTT 182378 || |||||||| || ||||||||| | ||||| || ||||||||||||||||| || || Sbjct 45891 ATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTC 45832 Query 182379 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAG 182438 || |||||||||||| | || || || || || ||||||| || |||||| | || Sbjct 45831 TCAGCTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAA 45772 Query 182439 TCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCC 182498 || ||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 45771 TCTGCTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCT 45712 Query 182499 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTG 182558 || || ||||| |||||| | ||||||||||||| |||||||||||||| ||| | | Sbjct 45711 CACGGTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTT 45652 Query 182559 CACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCC 182618 |||||| |||| | ||| ||||| || ||||| |||||||| || | | ||||| | Sbjct 45651 CACTTCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCT 45592 Query 182619 ACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 182678 || |||||||||||||| ||||||||||||||||||||||| | | ||| || ||| Sbjct 45591 ACTATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGT 45532 Query 182679 CGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATG 182738 ||||| | ||||||||||| || | | |||||| | || ||||||||||||||| Sbjct 45531 CGTGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATG 45472 Query 182739 CATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTGCTGAGTCAACTCCTGTT 182798 || ||||||||||| ||||||||||| |||||||| ||||||| |||||| || ||| Sbjct 45471 CACGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTCTCTACCAGTT 45412 Query 182799 GCACTTGTAGCACCTTCTGTTG 182820 || || || || || |||||| Sbjct 45411 GCTCTAGTTGCTCCAGCTGTTG 45390 Score = 536 bits (594), Expect = 1e-147 Identities = 730/1016 (72%), Gaps = 2/1016 (0%) Strand=Plus/Plus Query 183181 TTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGA 183240 |||||| | ||||||||||| | || || || || || || || || || ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 183241 CTCCTACTTCTTCCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTT 183299 || || | | |||||| ||| | || || | || |||||||| ||||| | |||| Sbjct 59853 CTTCTTC-TATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTT 59911 Query 183300 TGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCT 183359 || || |||||| || || || || || ||| | || ||||| |||||| || Sbjct 59912 CGTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCT 59971 Query 183360 TACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGG 183419 || || ||||| || || |||||| || ||||||||| || || || | | ||||| Sbjct 59972 AACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGG 60031 Query 183420 TCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGT 183479 ||||| | ||||| ||| | || |||| |||| |||| || || ||| |||| | Sbjct 60032 ACCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTAT 60091 Query 183480 GGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCG 183539 ||||| |||||| | |||| | | ||||||||| ||| |||||||||| | ||||| Sbjct 60092 TGCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCG 60151 Query 183540 CTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 183599 || | ||||| ||||||||||| || || || ||||||||||| || || || || || Sbjct 60152 TTTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGT 60211 Query 183600 CAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGG 183659 | || ||||| | || || | ||||| | |||||||||||||| ||||| || Sbjct 60212 TACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGG 60271 Query 183660 GGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAA 183719 ||||| ||||| || | ||||| | ||||| || ||||||||||||||||| | || Sbjct 60272 TGTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAA 60331 Query 183720 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCA 183779 ||| ||||| |||||||| || |||||||| || || || || |||| ||||||| || Sbjct 60332 CCCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCA 60391 Query 183780 TGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGC 183839 ||||| || |||||||| || | | |||||||| || || ||||| ||| || Sbjct 60392 TGGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGC 60451 Query 183840 ATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTC 183899 ||| | | || ||| ||||||||| || || |||||||| || || ||||||||||| Sbjct 60452 ATTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTC 60511 Query 183900 ACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGT 183959 || || || || ||||| || || ||||||||||| |||||||| ||| | || || Sbjct 60512 TCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGT 60571 Query 183960 TCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCG 184019 || || ||| | ||| | | || || || | || | || || || || || Sbjct 60572 ACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCG 60631 Query 184020 TGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTT 184079 ||| || ||||| || |||||| | ||||| |||||||| || ||||| || || || Sbjct 60632 TGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATT 60691 Query 184080 CTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCA 184139 |||||| || |||| ||||| |||||||| | ||||| ||| | || | ||||| Sbjct 60692 CTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCA 60751 Query 184140 ACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTT 184195 ||| ||||| || || || || || ||||||||| |||| | || || || |||| Sbjct 60752 ACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCTTT 60807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611669911165600