Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq3345 778 0.0 >seq3345 Length=67807 Score = 778 bits (862), Expect = 0.0 Identities = 799/1032 (77%), Gaps = 24/1032 (2%) Strand=Plus/Minus Query 164754 CTGGGAGTCTTTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTT 164813 ||||||| || |||| ||| | ||||| || | ||| | || || | |||||||| Sbjct 46426 CTGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTT 46367 Query 164814 CGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTTA--TTACTGCATTC 164871 |||| ||| ||| |||| | | || | |||| || ||| ||| ||| || Sbjct 46366 CGGTTGTCTAATGTTCCCTACTCTACTTACAGCTAT--TTCAGCTTACGTTATTGCTTTT 46309 Query 164872 ATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATG 164931 ||||| || || || || || || |||||||| ||||| || || || ||||||||| | Sbjct 46308 ATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTT 46249 Query 164932 TACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCAC 164991 ||||| ||||||||||||||||||||||| ||||| ||| ||||| ||||| ||||| Sbjct 46248 TACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCAC 46189 Query 164992 TTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTAC 165051 ||||| || || ||||||||||| | || ||||| ||| | |||||||||||| ||||| Sbjct 46188 TTCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTAC 46129 Query 165052 CAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAA 165111 || | ||||| ||||||||| |||| |||||| | ||||| |||||||||||||| Sbjct 46128 CAACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAG 46069 Query 165112 CTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCT 165171 || |||||||| || ||||||||||| ||||| || || || | || || || ||| Sbjct 46068 CTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCT 46009 Query 165172 GCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATG 165231 || || | ||||| ||| | |||| || |||||||||| |||||| ||||||||| Sbjct 46008 GCAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATG 45949 Query 165232 CCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATT 165291 ||||| ||||||||||||||||| |||| ||| | || |||||||| || || ||||| Sbjct 45948 CCTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATC 45889 Query 165292 CTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCT 165351 |||||||| || ||||||||||| || |||||||| ||||||||||| ||||| ||||| Sbjct 45888 CTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCA 45829 Query 165352 GCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGA-AACAGAGAG 165410 |||||||| || ||| || ||||| || || |||| || || ||||| ||| || Sbjct 45828 GCTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAAC---GAA 45772 Query 165411 TCAG--AACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCC 165468 || | ||||||||||| ||||| || |||||||||||||| || |||||||| || || Sbjct 45771 TCTGCTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCT 45712 Query 165469 CACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTG 165528 ||||| ||||| |||||||| | ||||||||||| || |||||||| || ||| | || Sbjct 45711 CACGGTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTT 45652 Query 165529 CACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGC 165588 |||||| |||| | || ||||| ||||||||||||||||| || || | ||||| ||| Sbjct 45651 CACTTCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGT-AGC 45593 Query 165589 -ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAA 165647 || |||||||||||||| ||||||||||||||||||||||| |||| ||| || | Sbjct 45592 TACTATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGAT--TC---A 45538 Query 165648 CAAAATC-----ATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAA 165702 ||| || ||| |||||||||||| |||| |||||| | || ||||||||| Sbjct 45537 CAAGGTCGTGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAA 45478 Query 165703 GTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGCTGCCGAGAGCACT 165762 |||||||| ||||||||||||||||||||||| || || || ||||||| ||| | || Sbjct 45477 GTTATGCACGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAG-TCTCT 45419 Query 165763 -CCTGTTGCTCT 165773 || |||||||| Sbjct 45418 ACCAGTTGCTCT 45407 Score = 724 bits (802), Expect = 0.0 Identities = 775/1019 (76%), Gaps = 4/1019 (0%) Strand=Plus/Plus Query 166161 TTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGA 166220 |||||| | |||| |||||||| || || || ||||||||||| ||||| ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 166221 CTTCTTCTTCTTCCCA-CTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTT 166279 ||||||| | |||||| ||| | || ||| | || |||||||| ||||| | |||||| Sbjct 59853 CTTCTTC-TATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTT 59911 Query 166280 CGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTTTCT 166339 ||| || |||||| ||||| || || ||||| | || || || ||||| || Sbjct 59912 CGTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCT 59971 Query 166340 TACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGG 166399 ||||| || || |||||||| || | ||||||||| || ||||| ||| ||||||| Sbjct 59972 AACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGG 60031 Query 166400 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGT 166459 ||||| || ||||| || || | |||| |||| |||| || |||||||| ||| | Sbjct 60032 ACCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTAT 60091 Query 166460 TGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG 166519 ||| || |||||| | |||| ||||||||||| ||| | |||||||| |||||||| Sbjct 60092 TGCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCG 60151 Query 166520 TCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGT 166579 | |||||||||||||||| ||||| ||||||||||| |||||||| || || || ||||| Sbjct 60152 TTTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGT 60211 Query 166580 TAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 166639 || || || || | |||||| | |||||| | |||||||| || || ||| ||| || Sbjct 60212 TACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGG 60271 Query 166640 GGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAA 166699 || | ||||| ||||| ||||| |||||||| ||||| |||||||||||||| || || Sbjct 60272 TGTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAA 60331 Query 166700 CCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCA 166759 |||||| || |||||||| ||||| ||||| || |||||||| || || | ||| || || Sbjct 60332 CCCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCA 60391 Query 166760 TGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGC 166819 ||||| || |||||||||||||| | |||||||||| || || |||||| || Sbjct 60392 TGGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGC 60451 Query 166820 ATTCGACT-CTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGT 166878 |||| ||| | || ||| ||||| || || ||||||||||| |||||||| | |||| Sbjct 60452 ATTC-ACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGT 60510 Query 166879 CTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTG 166938 ||||||| || ||| |||| || ||| ||| | ||||| || ||||| ||||| || | Sbjct 60511 CTCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCG 60570 Query 166939 TTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 166998 | || || ||| ||||||||||| | ||||||||| | ||| | || || ||||| | Sbjct 60571 TACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGC 60630 Query 166999 GTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCT 167058 |||| || || || ||||| ||||| || || || ||||| || ||||| || ||||| | Sbjct 60631 GTGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACAT 60690 Query 167059 TCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATC 167118 |||| || || |||| || | ||||| ||||| ||| | |||||||| | |||| Sbjct 60691 TCTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATC 60750 Query 167119 AACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||||||| | ||| | |||||||| ||||| || || | || ||||| || ||| Sbjct 60751 AACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCTTTAA 60809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563636759866880