Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1041 125 2e-23 seq1956 122 2e-22 seq2994 113 1e-19 seq1787 107 4e-18 seq2338 98.7 2e-15 >seq1041 Length=17511 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || || || ||||| || | || || | ||| || ||| Sbjct 5228 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTCG 5169 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 5168 AGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 5109 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||| | ||| || || || || ||||| | |||||| Sbjct 5108 ATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTCTTG 5049 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 5048 CCAGTGAGCGTCTTGACGAAGATCTGCAT 5020 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | ||| || | ||| || ||| Sbjct 5000 ACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCCTCG 4941 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 4940 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 4881 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || | ||| || || || || ||||| | |||||| Sbjct 4880 ATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTG 4821 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 4820 CCAGTGAGCGTCTTGACGAAGATCTGCAT 4792 >seq1956 Length=13199 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || || || || ||||||||||| || | || || | || || || Sbjct 2534 AACGAGGTGCAGGGTCGAATCCTTCTGAATATTGTAGTCTGAGAGGGTGCGGCCGTCCTC 2593 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || || ||||| || || ||||| || ||||| || Sbjct 2594 GAGCTGCTTGCCCGCGAAGATCAGGATCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 2653 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| || || | |||||| ||||| ||||| || | |||||| Sbjct 2654 AATCTTGGCCTTGACGTTGTCGATCGAGTCCGACGCGTCCACCTCAAGCGTGAGCGTCTT 2713 Query 195111 TCCTGTCAAAGTTTTTACGA 195130 ||| || | || || |||| Sbjct 2714 TCCGGTGAGCGTCTTGACGA 2733 >seq2994 Length=21391 Score = 113 bits (124), Expect = 1e-19 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || || || || || |||||||||| || || | ||||| ||| Sbjct 16546 ACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGACCATCCTCG 16605 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || ||||| || || ||||| || |||||||| Sbjct 16606 AGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 16665 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||||||| |||||| ||||||| || || || ||||| Sbjct 16666 ATCTTGGCCTTGACGTTGTCAATGCTGTCCGAGGGCTCGACCTCGAGGGT 16715 >seq1787 Length=9008 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || |||||||| | || || | || || ||| Sbjct 970 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCG 911 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 910 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 851 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| | || | |||||| || || || ||||| | |||||| Sbjct 850 ATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTCTTG 791 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 790 CCGGTGAGCGTCTTGACAAAGATCTGCAT 762 >seq2338 Length=9794 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || ||||||||||| | || || | || || ||| Sbjct 8131 ACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCG 8190 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 8191 AGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 8250 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| | || | ||||| | || || || ||||| | |||||| Sbjct 8251 ATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGACCTCGAGGGTGATCGTCTTG 8310 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 8311 CCGGTGAGCGTCTTGACAAAGATCTGCAT 8339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109433097625004