Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq3345 673 0.0 >seq3345 Length=67807 Score = 673 bits (746), Expect = 0.0 Identities = 715/941 (76%), Gaps = 4/941 (0%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 ||||||| |||| ||||| || || ||||||||||| ||||||||||| ||||||||||| Sbjct 45421 AGACTCACCAGCAGCTAGATCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 45480 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| |||| || | |||||||||||||||||||||||| || || | || | || Sbjct 45481 CATACCTAGGTTTGAACGGTTAAGAATGTCAGCCCAAGTGTTGATTACACGACCTTGTGA 45540 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 ||| || |||||||| |||||||| || ||||| || || || |||||||| | || || Sbjct 45541 ATCTACAACTGACTGGTTGAAGTTGAAACCGTTTAGGTTGAATGCCATAGTAGCTACACC 45600 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 ||||| || | ||| || | | || ||||||||| | |||| ||| || || ||| Sbjct 45601 CATAGATGTTAACCAGATACCAACTACTGGCCAAGCACCTAGGACGAAGTG--AAGTGCA 45658 Query 36200 GCTA--TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCA 36257 | || || || ||| || ||||||| || | || ||||| || ||||| ||| Sbjct 45659 CGTGAGTTGTTGAATGAAGCGTATTGGAAGAATAGACGACCTAAGTAACCGTGAGCTGCA 45718 Query 36258 ACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGC 36317 || ||||| || |||||||||||||| ||||| || || || ||||| |||||| | Sbjct 45719 ACGATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCGTAGTTAGCAGATTCGTTC 45778 Query 36318 CCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAA 36377 |||| |||||||| || || || ||||| || ||| ||||||||||| | ||||| | Sbjct 45779 TCAGTAGTTTCACGGATTAGAGATGAAGTTACTAGAGAACCGTGCATAGCTGAGAATAGA 45838 Query 36378 GCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGT 36437 | ||||||||||| || |||||||| ||||| ||||| || ||||||||||| ||||| Sbjct 45839 GAACCACCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGC 45898 Query 36438 TCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCA 36497 || || || || |||| ||| || |||||||| || || ||||| |||||||||||||| Sbjct 45899 TCAGCTTGGAATACAAGCATGAAGTTGAAAGTACCAGAGATACCTAGAGGCATACCATCT 45958 Query 36498 GAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGG 36557 |||||| ||||| || | ||||||| || |||||| ||| ||||||| || || || Sbjct 45959 GAGAAAGAACCTTGACCGATTGGGTAGATTACGAATACTGCAGATGCTGCAGCTACTGGA 46018 Query 36558 GCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGT 36617 ||||| |||| ||||| ||||| || | ||||||||| | ||| ||| ||||| | Sbjct 46019 GCTGAGAAAGCAACACAGATCCATGGACGCATACCTAGACGGTAAGAAAGCTCCCACTCA 46078 Query 36618 CGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCT 36677 || || | |||||| | | |||||||| |||||||| |||| ||||| || | || Sbjct 46079 CGACCGATGTAAGCACATACACCAATGAAGAAGTGGAAAACAACTAGTTGGTAAGTACCA 46138 Query 36678 CCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 36737 ||||| |||| |||||| |||| | |||||||||||||||||||||||||||| |||| Sbjct 46139 CCGTTGTATAGCCACTCATCGATTGAAGCAGCTTCCCAGATTGGGTAGAAGTGAACACCG 46198 Query 36738 ATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCT 36797 || ||||| || ||| || | || |||||||||||||||||||| || |||| | Sbjct 46199 ATAGCGTTTGAACTTGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAAAGTAGAGAA 46258 Query 36798 CCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATT 36857 || | || |||||||| |||||||| ||||| || ||||| || || | ||| ||||| Sbjct 46259 CCAGCAACTGGCTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATAAAAGCAATA 46318 Query 36858 AAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 36898 | | |||| | ||||| | || | ||||| |||||| Sbjct 46319 ACGTAAGCTGAAATAGCTGTAAGTAGAGTAGGGAACATTAG 46359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150448303963848