Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq3345 583 3e-162 >seq3345 Length=67807 Score = 583 bits (646), Expect = 3e-162 Identities = 662/886 (75%), Gaps = 4/886 (0%) Strand=Plus/Plus Query 5183 GACTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCC 5242 |||||| |||| |||||||| || |||||||||||||| || || |||||||| |||||| Sbjct 45422 GACTCACCAGCAGCTAGATCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCC 45481 Query 5243 ATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAG 5302 ||||| ||||| | |||||| || | || ||||||||| | | | ||| || Sbjct 45482 ATACCTAGGTTTGAACGGTTAAGAATGTCAGCCCAAGTGTTGATTACACGACCTTGTGAA 45541 Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 || || |||||||| |||||||| || ||||| || || || |||||||| | | ||| Sbjct 45542 TCTACAACTGACTGGTTGAAGTTGAAACCGTTTAGGTTGAATGCCATAGTAGCTACACCC 45601 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 ||||| || | ||| || | ||| || ||||||| | | |||| ||| || | ||| Sbjct 45602 ATAGATGTTAACCAGATACCAACTACTGGCCAAGCACCTAGGACGAAGTGAAGTGCACGT 45661 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482 ||||| || ||| || ||||||| || | || ||||| || ||||| ||||| Sbjct 45662 GAGTTGTTGAATGAAGCGTATTGGAAGAATAGACGACCTAAGTAACCGTGAGCTGCAACG 45721 Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCA 5542 ||||| || || ||||| ||||| ||||| || || || ||||| ||| | || Sbjct 45722 ATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCGTAGTTAGCAGATTCGTTCTCA 45781 Query 5543 GTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCT 5602 || |||||||| || || || ||||| || ||| || |||||||| | ||| | || Sbjct 45782 GTAGTTTCACGGATTAGAGATGAAGTTACTAGAGAACCGTGCATAGCTGAGAATAGAGAA 45841 Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 ||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||||| || Sbjct 45842 CCACCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 45901 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 || |||||||| | ||| ||||| ||||||||||||||||| |||||||||||||| | Sbjct 45902 GCTTGGAATACAAGCATGAAGTTGAAAGTACCAGAGATACCTAGAGGCATACCATCTGAG 45961 Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCT 5782 ||| || || |||| ||||| | || ||||||| | ||||| || || || ||| Sbjct 45962 AAAGAACCTTGACCGATTGGGTAGATTACGAATACTGCAGATGCTGCAGCTACTGGAGCT 46021 Query 5783 GAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGT 5842 || | || || || |||||||| ||||| |||| | |||| ||| ||||| | || Sbjct 46022 GAGAAAGCAACACAGATCCATGGACGCATACCTAGACGGTAAGAAAGCTCCCACTCACGA 46081 Query 5843 CCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCA 5902 || | |||||| | |||||| | ||||||||| || || |||||||| | || || Sbjct 46082 CCGATGTAAGCACATACACCAATGAAGAAGTGGAAAACAACTAGTTGGTAAGTACCACCG 46141 Query 5903 TTGTAAAGCCATTCATCGAGATTG--GCTGCTTCCCAGATGGGATAGAAGTGTAACCCAA 5960 ||||| ||||| ||||| ||||| || ||||||||||| || |||||||| | || | Sbjct 46142 TTGTATAGCCACTCATC--GATTGAAGCAGCTTCCCAGATTGGGTAGAAGTGAACACCGA 46199 Query 5961 TTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATC 6020 | ||||| || || || || || || || || |||||||||||||| || |||||||| | Sbjct 46200 TAGCGTTTGAACTTGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAAAGTAGAGAAC 46259 Query 6021 CTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGC 6066 | || || || ||||| || || ||||| || ||||| ||||| || Sbjct 46260 CAGCAACTGGCTCACGGATACCATCGATATCTACTGGAGGTGCTGC 46305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152643415019832