Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq3345 648 0.0 >seq3345 Length=67807 Score = 648 bits (718), Expect = 0.0 Identities = 707/939 (75%), Gaps = 0/939 (0%) Strand=Plus/Plus Query 25440 AGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 25499 ||||||| ||| |||| || |||||||||||||| ||||||||||| ||||||||||| Sbjct 45421 AGACTCACCAGCAGCTAGATCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 45480 Query 25500 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 25559 ||| |||| || | |||||||||||||||||||||||| || || | || | || Sbjct 45481 CATACCTAGGTTTGAACGGTTAAGAATGTCAGCCCAAGTGTTGATTACACGACCTTGTGA 45540 Query 25560 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 25619 ||| || |||||||| |||||||| || ||||| || || || |||||||| | || || Sbjct 45541 ATCTACAACTGACTGGTTGAAGTTGAAACCGTTTAGGTTGAATGCCATAGTAGCTACACC 45600 Query 25620 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACG 25679 ||||| || | ||| || | | || ||||||||| | |||| ||| || | ||| Sbjct 45601 CATAGATGTTAACCAGATACCAACTACTGGCCAAGCACCTAGGACGAAGTGAAGTGCACG 45660 Query 25680 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 25739 || || || ||| || ||||||| || | || ||||| || ||||| ||||| Sbjct 45661 TGAGTTGTTGAATGAAGCGTATTGGAAGAATAGACGACCTAAGTAACCGTGAGCTGCAAC 45720 Query 25740 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 25799 ||||| || |||||||||||||| ||||| || || || ||||| |||||| | | Sbjct 45721 GATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCGTAGTTAGCAGATTCGTTCTC 45780 Query 25800 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 25859 ||| |||||||| || || || ||||| || ||| ||||||||||| | ||||| || Sbjct 45781 AGTAGTTTCACGGATTAGAGATGAAGTTACTAGAGAACCGTGCATAGCTGAGAATAGAGA 45840 Query 25860 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 25919 ||||||||||| || |||||||| ||||| ||||| || ||||||||||| ||||| || Sbjct 45841 ACCACCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTC 45900 Query 25920 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 25979 || || || |||| ||| || |||||||| || || ||||| |||||||||||||| || Sbjct 45901 AGCTTGGAATACAAGCATGAAGTTGAAAGTACCAGAGATACCTAGAGGCATACCATCTGA 45960 Query 25980 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 26039 |||| ||||| || | ||||||| || |||||| ||| ||||||| || || || || Sbjct 45961 GAAAGAACCTTGACCGATTGGGTAGATTACGAATACTGCAGATGCTGCAGCTACTGGAGC 46020 Query 26040 TGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCG 26099 ||| |||| ||||| ||||| || | ||| ||||| | ||| ||| ||||| | || Sbjct 46021 TGAGAAAGCAACACAGATCCATGGACGCATACCTAGACGGTAAGAAAGCTCCCACTCACG 46080 Query 26100 TCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACC 26159 || | |||||| | | || |||| |||||||| |||| ||||| || | ||||| Sbjct 46081 ACCGATGTAAGCACATACACCAATGAAGAAGTGGAAAACAACTAGTTGGTAAGTACCACC 46140 Query 26160 GTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 26219 ||| || | |||||| |||| | |||||||||||||||||||||||||||| |||||| Sbjct 46141 GTTGTATAGCCACTCATCGATTGAAGCAGCTTCCCAGATTGGGTAGAAGTGAACACCGAT 46200 Query 26220 TGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCC 26279 ||||| || || || | || || ||||||||||||||||| || |||| | || Sbjct 46201 AGCGTTTGAACTTGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAAAGTAGAGAACC 46260 Query 26280 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 26339 | || |||||||| |||||||| ||||| || ||||| || || | ||| ||||| | Sbjct 46261 AGCAACTGGCTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATAAAAGCAATAAC 46320 Query 26340 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 26378 | |||| | ||||| | || | ||||| |||||| Sbjct 46321 GTAAGCTGAAATAGCTGTAAGTAGAGTAGGGAACATTAG 46359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151987441599312