Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1787 95.1 9e-15 seq3311 82.4 6e-11 seq2411 82.4 6e-11 >seq1787 Length=9008 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||| || || | || |||| || | |||||| |||||||| Sbjct 953 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 894 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| || || | ||| | |||||||||||| ||||| || || Sbjct 893 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 834 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 || | || || |||| ||| ||||| | || ||||| || || || | || || || Sbjct 833 GCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGAC 774 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 773 AAAGATCTGCAT 762 >seq3311 Length=43904 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 9139 TGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCC 9198 |||||||| || || || ||||| || | ||| || | ||||| || || |||||| Sbjct 25379 TGATTGAAGAGGACGACGCCCACTGGGCCGCGGTAGTCGGCGTCGATGACGCCTGCACCC 25320 Query 9199 ACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTA 9251 |||||||| | ||||||||| || || |||||||||||||| || ||||| Sbjct 25319 GTATCGATGAAATTCTTGACCGCGAGGCCCGAGCGGGGCGCGATGCGCCCGTA 25267 >seq2411 Length=24813 Score = 82.4 bits (90), Expect = 6e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||| || || || | || |||| |||| |||| Sbjct 4403 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGC 4344 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || ||||| ||||||| ||| | |||||||||||| ||||| Sbjct 4343 TTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 4284 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || | ||||||||| | || ||||| || ||| | Sbjct 4283 GCCTTGACATTGTCGATGGAGTCCGAAGGCTCCACCTCAAGGGTGATCGTCTTGCCCTGC 4224 Query 48744 AAA 48746 ||| Sbjct 4223 AAA 4221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380921759186076