Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq3345 825 0.0 >seq3345 Length=67807 Score = 825 bits (914), Expect = 0.0 Identities = 797/1015 (79%), Gaps = 10/1015 (1%) Strand=Plus/Minus Query 162508 TGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGT-GTCTTGATGATCCC 162566 ||| |||| ||| ||| || | | || | |||||||||||| |||| ||| |||| Sbjct 46407 TGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTA-ATGTTCCC 46349 Query 162567 TTGCTTGCTCGCAGCAGCAACTT--GCTT-CATCATTGCATTCATTGCAGCACCTCCAGT 162623 | | || |||| | || |||| | | ||||| || || |||||||||||||| Sbjct 46348 TACTCTACTTACAGCT---ATTTCAGCTTACGTTATTGCTTTTATCGCAGCACCTCCAGT 46292 Query 162624 TGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCAT 162683 ||||||||||||||| | || || ||||| ||||| || || || || ||||||||||| Sbjct 46291 AGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAACAACATCAT 46232 Query 162684 CTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGA 162743 |||||||||||| ||||| |||||||| ||||| ||| |||||||||| || |||||||| Sbjct 46231 CTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCAATCTGGGA 46172 Query 162744 AGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCA 162803 ||| || | | ||||||||| | || || ||||| ||| |||||| || || ||||| Sbjct 46171 AGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTTGTTTTCCA 46112 Query 162804 CTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGG 162863 |||| | || || | || ||| |||||| ||||||| ||||||||||| |||| Sbjct 46111 CTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTACCGTCTAGG 46052 Query 162864 TATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTT 162923 ||||||||| |||||||||||||| | ||| || |||||| ||||||||| || || || Sbjct 46051 TATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATT 45992 Query 162924 CTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGG 162983 | | |||| || ||||||||||||||||||| || | |||||||| ||||| ||||| Sbjct 45991 CGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGTATCTCTGG 45932 Query 162984 TACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCA 163043 |||||| |||| |||| | || |||||||| |||||||||||||| |||||||| ||||| Sbjct 45931 TACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCA 45872 Query 163044 TATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCT 163103 ||| |||| || || ||||||||||||||||| || || ||||||||||||||||| Sbjct 45871 CATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCACGGTTCTCT 45812 Query 163104 TGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAA 163163 || ||||| ||||| ||| | |||||||||||| | || || ||||||||||| || Sbjct 45811 AGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTACGGTTACAA 45752 Query 163164 GTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTT 163223 |||||| ||||||||||||||||||||||| ||||| ||||| || ||||| ||||| | Sbjct 45751 GTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTAGGTCGTCT 45692 Query 163224 GATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATT 163283 ||||||| || || || ||||||||||||||| ||||||||||| |||| | ||| | Sbjct 45691 ATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTCGTCCTAGGTGCTTG 45632 Query 163284 CCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAA 163343 || || || | |||||||| || | |||||||| | ||||||||||||||||| || Sbjct 45631 GCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTATGGCATTCAACCTAAA 45572 Query 163344 CGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGC 163403 |||||||||||||||||| || || || || || ||| || || |||||||| Sbjct 45571 CGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTAATCAACACTTGGGC 45512 Query 163404 AGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAA 163463 || || |||||| | || || |||||||||||||||||||||||||| |||||||| Sbjct 45511 TGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAACGCTCACAA 45452 Query 163464 CTTCCCACTTGACCTTGCTGCTGCTGAGACATCT-CAGGTTGCTCTAACTGCACC 163517 |||||| || || || ||||||| |||| | ||| | ||||||||| ||| || Sbjct 45451 CTTCCCTCTAGATCTAGCTGCTGGTGAGTC-TCTACCAGTTGCTCTAGTTGCTCC 45398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553061210933280