Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq3345 798 0.0 seq2756 89.7 5e-13 >seq3345 Length=67807 Score = 798 bits (884), Expect = 0.0 Identities = 783/1007 (78%), Gaps = 6/1007 (1%) Strand=Plus/Minus Query 8239 TGGGAAAATTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTT 8298 ||||| | || |||| |||| ||||||| || | || | | || | || ||||| Sbjct 46425 TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTC 46366 Query 8299 GGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTT--GCTT-CATTACCGCATTC 8355 || ||| ||| |||| || || ||| | |||| ||| |||| | ||| || || Sbjct 46365 GGTTGTCTAATGTTCCCTACTCTACTTACAGCTA---TTTCAGCTTACGTTATTGCTTTT 46309 Query 8356 GTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATG 8415 | || || ||||| || || ||||| || ||||| || ||||||||||| ||||| | Sbjct 46308 ATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTT 46249 Query 8416 TACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCAC 8475 ||||| |||||||||||||||||||| || ||||| || || ||||| || || | ||| Sbjct 46248 TACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCAC 46189 Query 8476 TTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTAC 8535 |||||||| ||||||||||| ||||| | ||||||||||| |||||||||||| ||||| Sbjct 46188 TTCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTAC 46129 Query 8536 CAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAA 8595 || || || |||||||||||| || |||| || | |||||| || |||||||| ||||| Sbjct 46128 CAACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAG 46069 Query 8596 CTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCC 8655 ||||||||||| || || |||||||| |||||||||||||| | ||| ||||| || || Sbjct 46068 CTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCT 46009 Query 8656 GCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATG 8715 || || ||||| |||||| | |||| || | ||||||||||| ||||| ||||||||| Sbjct 46008 GCAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATG 45949 Query 8716 CCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATC 8775 ||||| |||||||| ||||| ||||||| |||||||| ||||| ||||||||||||||| Sbjct 45948 CCTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATC 45889 Query 8776 CTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCC 8835 || |||||||| |||||||||||||||||||||||||| ||||| || ||||| || || Sbjct 45888 CTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCA 45829 Query 8836 GCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCT 8895 || ||||| ||||| || || ||||| || || | ||||| || || || | ||| ||| Sbjct 45828 GCTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCT 45769 Query 8896 CAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCAT 8955 ||||| || |||||||||||||||||||| || ||||||||||| ||||| ||||| Sbjct 45768 GCTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCAC 45709 Query 8956 GGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCAT 9015 || ||||| ||||| | |||||||||| || || || ||||| || | | || Sbjct 45708 GGTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCAC 45649 Query 9016 TTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACC 9075 ||| |||| | ||| ||||| || || || |||||||| || | | || || | || Sbjct 45648 TTCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACT 45589 Query 9076 ATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGA 9135 ||||| |||||||| || || ||||||||||||||||| || | || |||||| || Sbjct 45588 ATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGT 45529 Query 9136 GTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCAC 9195 || ||||||| ||||| ||| | |||||||| || || ||||||||||| |||||| Sbjct 45528 GTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCAC 45469 Query 9196 GAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGAGTC 9242 || | ||||| ||||||||||| || || || || |||| |||||| Sbjct 45468 GAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 542 bits (600), Expect = 3e-149 Identities = 715/989 (72%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 9825 TTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTT 9884 ||||||||||||| || || || || || ||||| || || ||||||||||| ||||| | Sbjct 59803 TTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGACTTCTTCTAT 59862 Query 9885 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTT 9944 | || ||| | || || | ||||| ||||| ||||| | ||| || || || || Sbjct 59863 TCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTCGTAACATCTT 59922 Query 9945 GGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTG 10004 ||||||||||||| || |||||| | ||| || || ||| ||||| || || |||| Sbjct 59923 GGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTAACTGCTGCTG 59982 Query 10005 TCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 10064 | || || |||||| | ||||||||| || || || || | ||||| ||||| | | Sbjct 59983 TATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGACCTGAAGCAC 60042 Query 10065 AGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 10124 | || || || || ||| |||| |||| || || ||||||||| | || || |||| Sbjct 60043 AAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATTGCACTACACG 60102 Query 10125 GAGCCTTCGCTTTAATCGGCTTTATGT-TACGCCAGTTTGAGCTGGCGAGATTAATTGGA 10183 | | || | | |||| || ||| ||| | | ||||||||| | || | ||| | || Sbjct 60103 GTTCGTTTGGTGTAATTGG-TTTCTGTCTTAGACAGTTTGAGATCGCTCGTTTAGTAGGT 60161 Query 10184 ATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTC 10243 || || |||||||| || ||||| || ||||| || || || || || || | |||||| Sbjct 60162 ATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTTACAGTTTTC 60221 Query 10244 CTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCG 10303 || | || || | || || | |||||||||||||| || ||||| || || ||||| Sbjct 60222 CTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGTGTAGCGGCA 60281 Query 10304 ATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCAT 10363 |||||||| |||||||| ||||| || || || || || ||||| || || || ||||| Sbjct 60282 ATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAACCCATTCCAC 60341 Query 10364 ATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACT 10423 |||||||| || |||||||| || || || || | |||| || || || || | ||| Sbjct 60342 ATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCATGGTGCGACT 60401 Query 10424 GTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGC 10483 ||||| ||||| |||| ||||||| || || ||||||||| || || | Sbjct 60402 GTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCATTCACTCCA 60461 Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 || ||| ||||||||| || || ||||||||||| |||||||||||||| ||||| ||| Sbjct 60462 ACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATTTTT 60521 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603 || |||| || || || || ||| | || ||||| ||||| || ||||| || Sbjct 60522 GGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTACCAGTAGCT 60581 Query 10604 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 10663 ||| | ||||| | | || || || | ||| | || || || || ||||| |||||| Sbjct 60582 GGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGTGCATACGAT 60641 Query 10664 TTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 10723 || || || |||||| | || || ||||||| |||||||| || || ||||| ||||| Sbjct 60642 TTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTCTACACGAAA 60701 Query 10724 AATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAA 10783 || | |||||| || |||||| | ||||| |||||||| || || ||||| || ||| Sbjct 60702 AACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAACCTCATGAA 60761 Query 10784 AGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 | ||| | ||||| || || || || || Sbjct 60762 AACTTCATCTTCCCTGAGGAGGTACTACC 60790 >seq2756 Length=33385 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 15402 CGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAAA 15461 ||||| ||||||||||||||||||| |||| ||||||||||| || | |||||||||| Sbjct 5372 CGGGATGTAGCGCAGTTTGGTAGCGCATCTGCCTTGGGAGCAGGGTGTCGCAGGTTCAAA 5431 Query 15462 TCCTGTATTCCCGA 15475 |||||| |||||| Sbjct 5432 TCCTGTCATCCCGA 5445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516457972128000